View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_3 (Length: 457)
Name: NF8493_low_3
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 5294790 - 5294361
Alignment:
| Q |
11 |
ttatactggatagatgaatgaatgtattgcacatgactctgtcgtgtttctctcaagtgtcttgtgatgtattggaagaatactagctactgggaagtaa |
110 |
Q |
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| T |
5294790 |
ttatattggatagatgaatgaatgtattgcacatgactctgtcgtgtttctctcaagtgtcttgtgatgtattggaagaatactagctactaggaagtaa |
5294691 |
T |
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| Q |
111 |
agctctagctagcacattgttgctattcatttatcatgattcatcaattattggccacaaatctatgttttgtctgattgtaatccatatcatttttatt |
210 |
Q |
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| T |
5294690 |
agctctagctagcacattgttgctattcatttatcatgattcatcaattattggccacaaatctatgttttgtctgattgtaatccatatcatttttatt |
5294591 |
T |
|
| Q |
211 |
ggttcttgttcatgtctgaaagatgattggttttattgtccggatgagaatgagaaatcttttctaaattcttcacgtggaggtgtataagtgatcaaga |
310 |
Q |
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| T |
5294590 |
ggttcttgttcatgtctgaaagatgattggttttattgtccggatgagaatgagaaatcttttctaaattcttcacgtggaggtgcataagtgatgaaga |
5294491 |
T |
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| Q |
311 |
cacttcgaagtcggtaaaagatatatacatcaacaaagtgttatcaagttaaatagcggtattgctacgtcaaaacccacattatcaaattaatttgggg |
410 |
Q |
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| T |
5294490 |
cacttcaaagtcggtaaaagatatatacatcaacaaagtgttatcaagttaaatagcggtattgctacgtcaaaacccacattagcaaattaatttgggg |
5294391 |
T |
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| Q |
411 |
ttagacccccttgttttgagagatgattagt |
441 |
Q |
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| T |
5294390 |
ttaga-ccccttgttttgagagatgattagt |
5294361 |
T |
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