View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8493_low_31 (Length: 242)
Name: NF8493_low_31
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_31 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 31901116 - 31901017
Alignment:
| Q |
1 |
ttgattttattagtagagaagaataaggataaatcatgaacactaatgcatcctatatggcaaatcttagttgaatttaagatgatgcatgttctgttag |
100 |
Q |
| |
|
|||||| | ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31901116 |
ttgattatgttagtagagaataatcaggataaatcatcaacactaatgcatcctatatggcaaatcttagttgaatttaagatgatgcatgttctgttag |
31901017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 19919798 - 19919711
Alignment:
| Q |
126 |
cggagcaacgttgcgctgagggcgtgcacgtgaaccccctcaattttaatatttacacttaaaattgtatgttttttatgtgttgaat |
213 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19919798 |
cggagccacgttgcattgagggtgtgcacgtgaaccccttcaattttaatatttacacttaaaattgtatgttttttatgcgttgaat |
19919711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 29221050 - 29221136
Alignment:
| Q |
142 |
tgagggcgtgcacgtgaaccccctcaattttaatatttacacttaaaa-ttgtatgttttttatgtgttgaattccctcaatattatg |
228 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
29221050 |
tgagggtgtgcacgtgaacccc-tcaattttaatatttacacttaaaatttttatgtgttttatgtgttgaatcccctcaatattatg |
29221136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 8398964 - 8398862
Alignment:
| Q |
13 |
gtagagaagaataaggataaatcatgaacactaatgcatcctatatggcaaatcttagttgaatttaagatgatgcatgttctgttagttataacttatg |
112 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||| || || | ||||||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
8398964 |
gtagagaagaataagggtaaatcattaacacagatgcattctccattgaaaatcttagttgaatttaagatgttgcatggcctcttccttataacttatg |
8398865 |
T |
|
| Q |
113 |
tta |
115 |
Q |
| |
|
||| |
|
|
| T |
8398864 |
tta |
8398862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 37036415 - 37036331
Alignment:
| Q |
142 |
tgagggcgtgcacgtgaaccccctcaattttaatatttacacttaaaattgtatgttttttatgtgttgaattccctcaatattatg |
228 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
37036415 |
tgagggtgtgcatgtgaacccc-tcaattttaatatttacacttaaaattatatg-tttttatgtgttgaatccccttaatattatg |
37036331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University