View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8493_low_34 (Length: 240)
Name: NF8493_low_34
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_34 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46959965 - 46960206
Alignment:
| Q |
1 |
gtgttcgtaagataagctccatat--acatttacattttcaatcttctcccatgcctttgattttcccaagctaccaatactgaaaaataggttcgagta |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46959965 |
gtgttcgtaagataagctccatatatacatttacattttcaatcttctcccatgcctttgattttcccaagctaccaatactgaaaaataggttcgagta |
46960064 |
T |
|
| Q |
99 |
tctgttaagaattatagtacttagtgtactaatgaactaaaagtaagtattagtttcaccttatgccatggcctggaccacaggaaaaatttctgatcca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46960065 |
tctgttaagaattatagtacttagtgtactaatgaactaaaagtaagtattagtttcaccttatgccatggcctggaccacaggaaaaatttctgatcca |
46960164 |
T |
|
| Q |
199 |
gacctgtgaagaatttcttactatggagatgcagtcatcacc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46960165 |
gacctgtgaagaatttcttactatggagatgcagtcatcacc |
46960206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 44522179 - 44521939
Alignment:
| Q |
9 |
aagataagctccatatacatttacattttcaatcttctcccatgcctttgattttcccaagctaccaatactgaaaaataggttcgagtatctgttaaga |
108 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| | |||||| ||||||| |
|
|
| T |
44522179 |
aagataagctccatcaacaattacattttgaatcttctcccatacgtttgattttcctaagctaccaatgctgaaaaataggtacaagtatcggttaaga |
44522080 |
T |
|
| Q |
109 |
attatag---------tacttagtgtactaatgaactaaaagtaagtattagtttcaccttatgccatggcctggaccacaggaaaaatttctgatccag |
199 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
44522079 |
attatacaatttattctacttggtgtcctaatgaactaaaagtgaacattactttcaccttatgccatgacctggaccacaggaaatatttcggatccag |
44521980 |
T |
|
| Q |
200 |
acctgtgaagaatttcttactatggagatgcagtcatcacc |
240 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44521979 |
acccgtgaagaatttctgactatggagatgcagtcatcacc |
44521939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University