View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_35 (Length: 239)
Name: NF8493_low_35
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 3376327 - 3376412
Alignment:
| Q |
138 |
atcttgaaagcactttgagtggacaagaatttctgacaaattcttttttatttgtggggtgtttttgatttcataaatcaaattct |
223 |
Q |
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| T |
3376327 |
atcttgaaagcactttgagtggacaagaatttctgacaaattcttttttatttgtggggtgtttttgatttcataaatcaaattct |
3376412 |
T |
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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3376190 - 3376263
Alignment:
| Q |
1 |
gaaaagataacccttgtacttgattatttggaacaaatgaaaatcttttgagaggtacttctacatatacattc |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3376190 |
gaaaagataacccttgtacttgattatttggaacaaatgaaaatcttttgagaggtacttctacatatacattc |
3376263 |
T |
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