View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_36 (Length: 238)
Name: NF8493_low_36
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 35243246 - 35243458
Alignment:
| Q |
8 |
tttgaaaagggatgatatcagaagggaactagtgaagctgttaatgcatactatattctgctcgcttgataggtttagaatctggcgatggcaatgttgt |
107 |
Q |
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| T |
35243246 |
tttgaaaagggatgatatcggaagggaactagtgaagctgttaatgcatactat--tctgctcgcttgataggtttagaatctggcgatggcaatgttgt |
35243343 |
T |
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| Q |
108 |
tactattggaccaaccttaacagctttggaaagtataagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagacca |
207 |
Q |
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| T |
35243344 |
tactattgggccaaccttaacagctttggaaagtataagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagacca |
35243443 |
T |
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| Q |
208 |
gggtttgcttatctt |
222 |
Q |
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| T |
35243444 |
gggtttgcttatctt |
35243458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 35231827 - 35232037
Alignment:
| Q |
1 |
aaaagaatttgaaaagggatgatatcagaagggaactagtgaagctgttaatgcatactatattctgctcgcttgataggtttagaatctggcgatggca |
100 |
Q |
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| T |
35231827 |
aaaagaatttgaaaagggaagatatcagaagggaactagtgaagctgttattgcatactat--tctgctcgcttgataggtttagaatatggtgatgcca |
35231924 |
T |
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| Q |
101 |
atgttgttactattggaccaaccttaacagctttggaaagtataagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattt |
200 |
Q |
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| T |
35231925 |
atgttgttactactggaccaaccttaacagctttgttaagtataagagctcaaatgtggtggcatgtaagagaagcaatgaatatgcgtgaggaaaattt |
35232024 |
T |
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| Q |
201 |
tagaccagggttt |
213 |
Q |
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| T |
35232025 |
tagaccagggttt |
35232037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 9665722 - 9665762
Alignment:
| Q |
21 |
gatatcagaagggaactagtgaagctgttaatgcatactat |
61 |
Q |
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| T |
9665722 |
gatatcagaaaggaacgagtgaagctattaatgcatactat |
9665762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 6526006 - 6525966
Alignment:
| Q |
152 |
aaatgtggtggcatgtaagagaaggaatgaatatgtatgag |
192 |
Q |
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| T |
6526006 |
aaatgtggtggcatgtaaaagaaggagggaatatgtatgag |
6525966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 13536746 - 13536786
Alignment:
| Q |
21 |
gatatcagaagggaactagtgaagctgttaatgcatactat |
61 |
Q |
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| T |
13536746 |
gatatcagaaaggaacgagtgaagctattaatgcatactat |
13536786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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