View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_38 (Length: 238)
Name: NF8493_low_38
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 31925518 - 31925724
Alignment:
| Q |
6 |
aatggttgtgcactccaattatgaaccaaattagaatccaaaaacatagtctcaactaacataaaatcaagacaataccagaaacaaaactgcagcaaca |
105 |
Q |
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| T |
31925518 |
aatggctgtgca-tccatttatgaaccaaattagaatccaaaaacatagtctcagctaacataaaatcaaggcaataccagaaacaaaactgcagcaaca |
31925616 |
T |
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| Q |
106 |
ccaactggcacatacagaacaataaaggagagcaatggtcgaaccaacggcaaagaactaca---ccagccaaagattaagggaaccctgcacccaaacc |
202 |
Q |
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| T |
31925617 |
ccaactggcacacacaagacaataaaggagagcaatggctgaaacaatggcaaagaactacaactgcagccaaagattaacagaaccctgcacccaaacc |
31925716 |
T |
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| Q |
203 |
acacaata |
210 |
Q |
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|||||||| |
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| T |
31925717 |
acacaata |
31925724 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 24511514 - 24511449
Alignment:
| Q |
7 |
atggttgtgcactccaattatgaaccaaattagaatccaaaaacatagtctcaactaacataaaat |
72 |
Q |
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| T |
24511514 |
atggatgtgcatttcaattacgaacaaaattacaatccaaaaatatagtctcaactaacatgaaat |
24511449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 24511388 - 24511328
Alignment:
| Q |
129 |
aaaggagagcaatggtcgaaccaacggcaaagaactacaccagccaaagattaagggaacc |
189 |
Q |
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| T |
24511388 |
aaaggagagcaatggccaaaacaatggcaaagaaccataccagcccaagataaagggaacc |
24511328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 8399249 - 8399341
Alignment:
| Q |
111 |
tggcacatacagaacaataaaggagagcaatggtcgaaccaacggcaaagaactacaccagccaaagattaagggaaccctgcacccaaacca |
203 |
Q |
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||||||| | ||| |||||||||||||| |||| || | ||||| ||| |||| ||||| || | ||| ||||||||||||||||||||||| |
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| T |
8399249 |
tggcacacagagagcaataaaggagagcgatggccggaacaacgacaacgaacggcaccaacccaggataaagggaaccctgcacccaaacca |
8399341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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