View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8493_low_4 (Length: 418)

Name: NF8493_low_4
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8493_low_4
NF8493_low_4
[»] chr5 (10 HSPs)
chr5 (106-402)||(12318190-12318502)
chr5 (1-60)||(12318501-12318560)
chr5 (35-134)||(12317894-12317993)
chr5 (28-126)||(16999111-16999209)
chr5 (62-152)||(6132858-6132948)
chr5 (42-116)||(20355657-20355730)
chr5 (62-134)||(38386545-38386617)
chr5 (45-104)||(15426131-15426190)
chr5 (51-97)||(7159550-7159596)
chr5 (38-75)||(43185852-43185889)
[»] chr3 (6 HSPs)
chr3 (1-159)||(1319021-1319179)
chr3 (42-123)||(28715147-28715228)
chr3 (47-135)||(4245762-4245850)
chr3 (43-122)||(497433-497512)
chr3 (80-150)||(36869975-36870045)
chr3 (66-122)||(28723363-28723419)
[»] chr6 (10 HSPs)
chr6 (15-134)||(11966513-11966632)
chr6 (44-135)||(11761407-11761497)
chr6 (47-118)||(21077304-21077375)
chr6 (35-121)||(21098561-21098647)
chr6 (35-121)||(21075420-21075506)
chr6 (35-104)||(20743061-20743130)
chr6 (47-135)||(21053613-21053701)
chr6 (62-118)||(21076888-21076944)
chr6 (47-122)||(21052197-21052272)
chr6 (47-118)||(21054039-21054109)
[»] chr4 (9 HSPs)
chr4 (35-122)||(36083560-36083647)
chr4 (48-136)||(12115939-12116027)
chr4 (42-116)||(5284243-5284316)
chr4 (282-337)||(34593013-34593068)
chr4 (35-102)||(46626810-46626877)
chr4 (44-102)||(25155522-25155580)
chr4 (47-135)||(30253110-30253198)
chr4 (44-102)||(5689374-5689431)
chr4 (47-135)||(24741205-24741291)
[»] chr1 (11 HSPs)
chr1 (35-135)||(9923834-9923934)
chr1 (35-135)||(11910123-11910223)
chr1 (35-152)||(12198626-12198742)
chr1 (57-134)||(18606031-18606108)
chr1 (44-97)||(126620-126673)
chr1 (62-150)||(41385311-41385399)
chr1 (47-134)||(26686421-26686514)
chr1 (47-134)||(33169277-33169370)
chr1 (44-95)||(31953370-31953421)
chr1 (51-97)||(16640285-16640331)
chr1 (73-109)||(18225188-18225224)
[»] chr2 (9 HSPs)
chr2 (32-134)||(16114225-16114327)
chr2 (35-152)||(9011369-9011485)
chr2 (62-134)||(34486000-34486072)
chr2 (47-150)||(34756742-34756851)
chr2 (35-122)||(9751913-9752000)
chr2 (47-134)||(13654735-13654822)
chr2 (35-122)||(38415868-38415955)
chr2 (47-95)||(29759791-29759839)
chr2 (47-96)||(8691174-8691223)
[»] scaffold0127 (2 HSPs)
scaffold0127 (52-150)||(28494-28592)
scaffold0127 (52-150)||(35400-35498)
[»] chr8 (7 HSPs)
chr8 (62-134)||(24674578-24674650)
chr8 (40-94)||(18983672-18983726)
chr8 (47-135)||(26945738-26945826)
chr8 (48-134)||(6377582-6377668)
chr8 (51-135)||(17898732-17898816)
chr8 (47-97)||(12478217-12478267)
chr8 (62-135)||(33091934-33092006)
[»] chr7 (7 HSPs)
chr7 (47-118)||(9236896-9236967)
chr7 (70-135)||(8670938-8671003)
chr7 (47-135)||(10656089-10656177)
chr7 (37-135)||(1756756-1756854)
chr7 (84-133)||(1099759-1099808)
chr7 (35-105)||(26641086-26641155)
chr7 (47-139)||(4675039-4675131)
[»] scaffold0655 (1 HSPs)
scaffold0655 (47-122)||(1489-1562)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 106 - 402
Target Start/End: Complemental strand, 12318502 - 12318190
Alignment:
Q  106 cctgaatccttggcaaattccacaggaaacgaaattcctgcggaaatatacctaaatttcgcagg-----------------cgagagtctctagtattg 188  Q
    ||||||||||||||||||||| ||||||| | ||||||| |||||||||||||| | ||||||||                 |||||||||||| | |||    
T  12318502 cctgaatccttggcaaattccgcaggaaaaggaattccttcggaaatatacctacaattcgcaggtacttctgcaggaaaatcgagagtctctactgttg 12318403  T
Q  189 gcattatgcttccaatcatcatctaatgacccgccatgcttcataaagaattttgtaaaatatagaaatgcataaattcaactgggaattgtttaatgag 288  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12318402 gcattatgcttccaaccatcatctaatgacc-gccatgcttcataaagaattttgtaaaatatagaaatgcataaattcaactgggcattgtttaatgag 12318304  T
Q  289 ttttacacataaaagctagcagtagagattaatttagtgctcagaataaacaagtataccagttcataacagattcaaatttctaaaaacaataaataaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  12318303 ttttacacataaaagctagcagtagagattaatttagtgctcagaataaacaagtataccagttcataacatattcaaatttctaaaaacaataaacaaa 12318204  T
Q  389 tggaaggatagaac 402  Q
    ||||||||| ||||    
T  12318203 tggaaggatcgaac 12318190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12318560 - 12318501
Alignment:
Q  1 ccagaagtttcctacggattatcaaatgagtatatccgcaggtaagtttcctgcggttcc 60  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  12318560 ccagaagtttcctacggattatcaaaggagtatatccgcagttaagtttcctgcggttcc 12318501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 12317894 - 12317993
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||||||| |||||||||| | ||  ||||||||||||||||| ||||||||||||||  || |||||||||| ||||||| ||||| |||| ||||||    
T  12317894 tccgcaggttagtttcctgcagatcataaaatcctcaggaaacaattacccacgaaggttatacctgggaacctaaatccttagcaaaatccataggaaa 12317993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 16999209 - 16999111
Alignment:
Q  28 gagtatatccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattcc 126  Q
    ||||||||||| || || ||||||||||||| | | ||||||| |||||   ||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  16999209 gagtatatccggagttacgtttcctgcggtttctataatcctcgggaaaacattatccacgaaggtattagctaggaacctgaatccctggcaaattcc 16999111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 6132948 - 6132858
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacgaaattcctgcggaaat 152  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||| |||| |||| ||||||| ||| ||||    |||||||||||||    
T  6132948 aaaatcctcaggaaacaattacccacgaaggttatacctgggaacctaaatctttggtaaattccgcagaaaacaggtttcctgcggaaat 6132858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 20355730 - 20355657
Alignment:
Q  42 gtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatcctt 116  Q
    |||| ||| |||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||    
T  20355730 gtaatttttctgcggttcctaaaatcctcaggaaacaattacccacaaaggtattagc-ggaaaccttaatcctt 20355657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 38386617 - 38386545
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||| || |||||||| |||||  ||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  38386617 aaaattctaaggaaacaattaccttcgaaggtattacctgggaacctcaatccttggcaaaatccgcaggaaa 38386545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 15426131 - 15426190
Alignment:
Q  45 agtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctggga 104  Q
    |||||| ||||||| |  |||||||||||||| | |||||||||||||||||| ||||||    
T  15426131 agtttcttgcggtttcagaaatcctcaggaaataattacccacgaaggtattacctggga 15426190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 7159550 - 7159596
Alignment:
Q  51 ctgcggttcccaaaatcctcaggaaacagttacccacgaaggtatta 97  Q
    |||||| ||| |||||||| |||||||| ||||||||||||||||||    
T  7159550 ctgcggatcctaaaatcctaaggaaacaattacccacgaaggtatta 7159596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 43185852 - 43185889
Alignment:
Q  38 gcaggtaagtttcctgcggttcccaaaatcctcaggaa 75  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  43185852 gcaggtaagtttcctgcggtttctaaaatcctcaggaa 43185889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 1319021 - 1319179
Alignment:
Q  1 ccagaagtttcctacggattatcaaatgagtatatccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagct 100  Q
    ||||||| ||||| ||||||||||   ||| ||||||||||| |  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  1319021 ccagaagattcctgcggattatcattagagaatatccgcaggaacttttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattagct 1319120  T
Q  101 gggaacctgaatccttggcaaattccacaggaaacgaaattcctgcggaaatataccta 159  Q
    ||||||||||||||||| |||||||| |||||||  |  ||||||||||||||||||||    
T  1319121 gggaacctgaatccttgacaaattccgcaggaaataactttcctgcggaaatataccta 1319179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 28715228 - 28715147
Alignment:
Q  42 gtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaat 123  Q
    |||| |||||||||||| | |||||||| |||||||| |||||| |||||||||||| ||||||||| |||| ||| |||||    
T  28715228 gtaactttcctgcggtttctaaaatcctaaggaaacaattacccgcgaaggtattagttgggaacctaaatcgttgacaaat 28715147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 4245762 - 4245850
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||  || |||| ||| | ||||||||| ||| ||| ||||||||    
T  4245762 tttcctgcggttactaaaatcctcaggaaacaattacccacgaaggttatacctggaaacttaaatccttggtaaaatccgcaggaaac 4245850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 497512 - 497433
Alignment:
Q  43 taagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    ||||||| |||||| ||  ||||||||||||||||| ||||||||||||||  || |||||||||| ||||||| |||||    
T  497512 taagttttctgcggatcgtaaaatcctcaggaaacaattacccacgaaggttatatctgggaacctaaatccttagcaaa 497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 36870045 - 36869975
Alignment:
Q  80 ttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacgaaattcctgcggaa 150  Q
    ||||||||||||||||||  ||||||||| |||||||| |||| |||  ||||||||   |||||||||||    
T  36870045 ttacccacgaaggtattacttgggaacctaaatccttgacaaaatccttaggaaacgggtttcctgcggaa 36869975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 28723419 - 28723363
Alignment:
Q  66 tcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    |||| |||||||| ||| ||||||||||||||| ||| ||||| |||||||| ||||    
T  28723419 tcctaaggaaacaattagccacgaaggtattagttggtaacctaaatccttgacaaa 28723363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 11966513 - 11966632
Alignment:
Q  15 cggattatcaaatgagtatatccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatcc 114  Q
    |||||||||| | ||||||||||||||  ||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||| |||||    
T  11966513 cggattatcatacgagtatatccgcagtcaagtttcctgcggtttcgaaaattctcacgaaacagttacccacgaaggtattagctgggaacctaaatcc 11966612  T
Q  115 ttggcaaattccacaggaaa 134  Q
    || ||||||||| |||||||    
T  11966613 ttagcaaattccgcaggaaa 11966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 11761407 - 11761497
Alignment:
Q  44 aagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    ||||||||||||| ||||||| |||| |||||||| |||||||||||||||||| || ||||||| || |||||||||| ||| ||||||||    
T  11761407 aagtttcctgcggatcccaaa-tcctaaggaaacaattacccacgaaggtattacctaggaacctaaaaccttggcaaaatccgcaggaaac 11761497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 21077304 - 21077375
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttgg 118  Q
    |||||||||| ||| |||||||||||||| || ||| ||||||||| |||| ||||||||||||||||||||    
T  21077304 tttcctgcggatcctaaaatcctcaggaatcaattaaccacgaaggcattacctgggaacctgaatccttgg 21077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 21098647 - 21098561
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaa 121  Q
    |||||||| ||||||||||||||| | ||||||||  ||||||| ||||||||||||||  || | |||||||| ||||||||||||    
T  21098647 tccgcaggaaagtttcctgcggtttctaaaatcctatggaaacaattacccacgaaggttataccagggaacctaaatccttggcaa 21098561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 21075506 - 21075420
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaa 121  Q
    |||||| | ||||||||||||||| | |||||||| |||||||| ||||||||||| ||  || | |||||||| ||||||||||||    
T  21075506 tccgcatgaaagtttcctgcggtttctaaaatcctaaggaaacaattacccacgaatgttataccagggaacctaaatccttggcaa 21075420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 20743130 - 20743061
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctggga 104  Q
    |||||||| || |||||||||||| | |||||||||||||||||  || |||||||||||||| ||||||    
T  20743130 tccgcaggaaattttcctgcggtttctaaaatcctcaggaaacaactatccacgaaggtattacctggga 20743061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 21053701 - 21053613
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||| ||||| ||| |||||| ||||||| || ||||||||||||||||||  |||||||||||||| |||| ||| ||| || |||||    
T  21053701 tttcatgcggatcctaaaatcgtcaggaatcaattacccacgaaggtattacttgggaacctgaatcattgggaaaatccgcatgaaac 21053613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 21076944 - 21076888
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttgg 118  Q
    |||||||||||||| || ||||||||||||||||||  |||||||||||||| ||||    
T  21076944 aaaatcctcaggaatcaattacccacgaaggtattacttgggaacctgaatcattgg 21076888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 21052272 - 21052197
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    |||||||||||| | |||||||| ||||||||  |||||||||||||  || |  ||||||| |||||||||||||    
T  21052272 tttcctgcggttactaaaatcctaaggaaacaactacccacgaaggttataccaaggaacctaaatccttggcaaa 21052197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 21054039 - 21054109
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttgg 118  Q
    |||||||||| ||| |||||| ||||||| || ||||||| ||||| |||| |||| |||||||||||||||    
T  21054039 tttcctgcggatcctaaaatcgtcaggaatcaattacccatgaaggcattacctgg-aacctgaatccttgg 21054109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 36083647 - 36083560
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||    
T  36083647 tccgcaggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaa 36083560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 12115939 - 12116027
Alignment:
Q  48 ttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacg 136  Q
    ||||||||| ||| ||||| || |||||||| |||||||||||||| ||| |||||||||  | |||||||||||||||  ||||||||    
T  12115939 ttcctgcggatcctaaaattctaaggaaacaattacccacgaaggtgttacctgggaaccaaattccttggcaaattccgtaggaaacg 12116027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 5284316 - 5284243
Alignment:
Q  42 gtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatcctt 116  Q
    |||| ||| |||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||    
T  5284316 gtaatttttctgcggttcctaaaatcctcaggaaacaattacccacaaaggtattagc-ggaaaccttaatcctt 5284243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 34593068 - 34593013
Alignment:
Q  282 taatgagttttacacataaaagctagcagtagagattaatttagtgctcagaataa 337  Q
    |||||| ||| ||||||| || |||||||||||||||| |||||||||||||||||    
T  34593068 taatgaatttcacacatagaaactagcagtagagattagtttagtgctcagaataa 34593013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 46626877 - 46626810
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgg 102  Q
    |||||| ||||||||||||||||||  |||||||||| ||| || ||||||||||| |||||| ||||    
T  46626877 tccgcaagtaagtttcctgcggttcataaaatcctcatgaagcaattacccacgaatgtattacctgg 46626810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 25155522 - 25155580
Alignment:
Q  44 aagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgg 102  Q
    ||||||||||||||| |  |||||||||||||||| ||| |||||||||||||| ||||    
T  25155522 aagtttcctgcggtttcttaaatcctcaggaaacaattaaccacgaaggtattacctgg 25155580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 30253198 - 30253110
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||||||||| | ||||| ||||||||||| ||||||||||||||  ||  ||||||| | |||||| || ||| ||| ||||||||    
T  30253198 tttcctgcggttactaaaattctcaggaaacaattacccacgaaggtcatacttgggaacttaaatcctaggtaaaatccccaggaaac 30253110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 5689431 - 5689374
Alignment:
Q  44 aagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgg 102  Q
    ||||||||||| ||| | ||||||||||||||||| ||||||||| |||||||| ||||    
T  5689431 aagtttcctgctgtttcaaaaatcctcaggaaacaattacccacg-aggtattacctgg 5689374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 24741291 - 24741205
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||||||| |||  ||||||||||||| || ||| ||||||| |||||| ||||||| |||||||||||| ||| ||| || |||||    
T  24741291 tttcctgcggatccttaaatcctcaggaatcaatta-ccacgaacgtatta-ctgggaaactgaatccttggaaaaatccgcatgaaac 24741205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 9923934 - 9923834
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||| ||| |||    
T  9923934 tccgcaggtaaatttcctgcggttactaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaaatccgcagaaaa 9923835  T
Q  135 c 135  Q
    |    
T  9923834 c 9923834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 11910223 - 11910123
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||| ||  |||||||    
T  11910223 tccgcaggttagtttcctggggttcctaaaatcctcaggaaacaattagccacgaaggtattacctggtaaccttaatcgttggcaaaatctgcaggaaa 11910124  T
Q  135 c 135  Q
    |    
T  11910123 c 11910123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 12198742 - 12198626
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||||||| | |||||| ||||| | ||||||||||| ||||| |||||||| ||||||||| |||||||||| ||| ||||||||| ||| |||||||    
T  12198742 tccgcaggtgactttcctacggttactaaaatcctcag-aaacaattacccacaaaggtattacctgggaaccttaattcttggcaaaatccgcaggaaa 12198644  T
Q  135 cgaaattcctgcggaaat 152  Q
    |   ||||||||||||||    
T  12198643 caggattcctgcggaaat 12198626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 18606031 - 18606108
Alignment:
Q  57 ttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||  || ||  ||||||||||||||| |||||||    
T  18606031 ttcctaaaatcctcaggaaatagttacccacaaaggtattagctggatacgtgtttccttggcaaattccgcaggaaa 18606108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 126673 - 126620
Alignment:
Q  44 aagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtatta 97  Q
    ||||||||||||||| | |||||| |||||||||| ||||||||||||||||||    
T  126673 aagtttcctgcggtttctaaaatcatcaggaaacatttacccacgaaggtatta 126620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 41385399 - 41385311
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacgaaattcctgcggaa 150  Q
    |||||||||||||| |  |||| ||||||||||||| |||||||||||||||||| | ||| ||| || |||||  | |||||||||||    
T  41385399 aaaatcctcaggaatccattacacacgaaggtattacctgggaacctgaatccttaggaaaatccgcatgaaaccgatttcctgcggaa 41385311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 26686421 - 26686514
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggta------ttagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    |||||||||| ||| |||||||| |||||||| |||||||||||| ||      ||| |||||||||| ||||||||||||| ||| |||||||    
T  26686421 tttcctgcggatcctaaaatcctaaggaaacaattacccacgaagatattacatttacctgggaacctaaatccttggcaaagtccgcaggaaa 26686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 33169277 - 33169370
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggta------ttagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    |||||||||| ||| || ||||| |||||||| |||||||||||||||      ||| |||||||||| ||||||||||||| ||| |||||||    
T  33169277 tttcctgcggatcctaatatcctaaggaaacaattacccacgaaggtattacatttacctgggaacctaaatccttggcaaaatccgcaggaaa 33169370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 31953370 - 31953421
Alignment:
Q  44 aagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtat 95  Q
    ||||||||||||||| | ||||||||||||||| | ||||||||||| ||||    
T  31953370 aagtttcctgcggtttctaaaatcctcaggaaataattacccacgaaagtat 31953421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 16640285 - 16640331
Alignment:
Q  51 ctgcggttcccaaaatcctcaggaaacagttacccacgaaggtatta 97  Q
    |||||| ||| |||||||| |||||||| ||||||||||||||||||    
T  16640285 ctgcggatcctaaaatcctaaggaaacaattacccacgaaggtatta 16640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 18225188 - 18225224
Alignment:
Q  73 gaaacagttacccacgaaggtattagctgggaacctg 109  Q
    |||||| |||||||||||||||||| |||||||||||    
T  18225188 gaaacaattacccacgaaggtattacctgggaacctg 18225224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 16114225 - 16114327
Alignment:
Q  32 atatccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacagg 131  Q
    ||||||||| ||| ||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||| || ||||    
T  16114225 atatccgcatgtatgtttcttgcggttcctaaaatccttaggaaacagttacccacaaaggtattagctgggaacctgaatccttgataaatgccgcagg 16114324  T
Q  132 aaa 134  Q
    |||    
T  16114325 aaa 16114327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 9011369 - 9011485
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    |||||||| | ||||||||| ||| | ||||||||||||||| | |||||||||||||||||| |||||||||| || |||||||||| ||  |||||||    
T  9011369 tccgcaggaatgtttcctgcagtttctaaaatcctcaggaaataattacccacgaaggtattatctgggaacctaaagccttggcaaaatctgcaggaaa 9011468  T
Q  135 cgaaattcctgcggaaat 152  Q
     | | |||||||||||||    
T  9011469 -ggatttcctgcggaaat 9011485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 34486000 - 34486072
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  34486000 aaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattccacatgaaa 34486072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 34756851 - 34756742
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggta------ttagctgggaacctgaatccttggcaaattccacaggaaacgaaat 140  Q
    |||||||||| ||| |||||||| |||||||| |||||||||||||||      ||| |||||||||| ||||||||||||| |||||||||||||  ||    
T  34756851 tttcctgcggatcctaaaatcctaaggaaacaattacccacgaaggtattacatttacctgggaacctaaatccttggcaaaatccacaggaaacgtgat 34756752  T
Q  141 tcctgcggaa 150  Q
    |||| |||||    
T  34756751 tcctacggaa 34756742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 9751913 - 9752000
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    |||||||||||||||||||| ||||   ||||||||| |||||| ||||| |||||||||||| ||||  |||| |||||||||||||    
T  9751913 tccgcaggtaagtttcctgcagttcttcaaatcctcatgaaacaattaccaacgaaggtattacctggataccttaatccttggcaaa 9752000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 13654735 - 13654822
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    |||||||| | ||| ||||||||| |||  || |||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  13654735 tttcctgcagatcctaaaatcctctggattcaattacccacgaaggtattacctgggaacctaaatccttggcaaaatccgcaggaaa 13654822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 38415868 - 38415955
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    |||||| |||||||||||| |||||| ||  ||||||||||||| |||||||||| ||||||| || |||||||  ||||||||||||    
T  38415868 tccgcatgtaagtttcctgtggttcctaagttcctcaggaaacaattacccacgatggtattacctaggaaccttgatccttggcaaa 38415955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 29759791 - 29759839
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtat 95  Q
    |||||||||||| | ||||||||||||||||| |||||||| |||||||    
T  29759791 tttcctgcggtttcaaaaatcctcaggaaacaattacccaccaaggtat 29759839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 8691223 - 8691174
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtatt 96  Q
    |||||||||||| | |||||||||| |||||| |||||||||||| ||||    
T  8691223 tttcctgcggtttctaaaatcctcacgaaacaattacccacgaagatatt 8691174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 28494 - 28592
Alignment:
Q  52 tgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacgaaattcctgcggaa 150  Q
    ||||| ||| |||||||||||||| || |||| ||||||||||||| |||||||||||||||||||| ||| ||| || |||||  | |||||||||||    
T  28494 tgcggatcctaaaatcctcaggaatcaattacacacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcggaa 28592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 35400 - 35498
Alignment:
Q  52 tgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacgaaattcctgcggaa 150  Q
    ||||| ||| |||||||||||||| || |||| ||||||||||||| |||||||||||||||||||| ||| ||| || |||||  | |||||||||||    
T  35400 tgcggatcctaaaatcctcaggaatcaattacacacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcggaa 35498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 24674578 - 24674650
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  24674578 aaaatcctaaggaaataattacccacgaaggtattacctgggaacctcaatccttggcaaaatccgcaggaaa 24674650  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 18983672 - 18983726
Alignment:
Q  40 aggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggta 94  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  18983672 aggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggta 18983726  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 26945826 - 26945738
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||||||||| | ||||||||||||| ||| ||||| ||||||||  || |||||||||| ||||||||| |||||||  |||||||    
T  26945826 tttcctgcggttactaaaatcctcaggagacaattaccaacgaaggttatacctgggaacctaaatccttggtaaattccgtaggaaac 26945738  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 6377668 - 6377582
Alignment:
Q  48 ttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaa 134  Q
    ||||||||| ||| |||||| |||||||||| |||||||||||| | |||  ||||||||| ||| |||| |||| |||||||||||    
T  6377668 ttcctgcggatcctaaaatcttcaggaaacaattacccacgaagctgttacatgggaacctaaattcttgacaaaatccacaggaaa 6377582  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 17898816 - 17898732
Alignment:
Q  51 ctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||||||| ||||||| ||||||| | |||||||||||||||||| ||||||     ||||||||||||| ||| ||||||||    
T  17898816 ctgcggttcctaaaatccacaggaaataattacccacgaaggtattacctgggagtgaaaatccttggcaaaatccgcaggaaac 17898732  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 12478267 - 12478217
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtatta 97  Q
    |||||||||| ||| |||||||| |||||||| |||||||||||| |||||    
T  12478267 tttcctgcggatcctaaaatcctaaggaaacaattacccacgaagatatta 12478217  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 33092006 - 33091934
Alignment:
Q  62 aaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||||| |||||||| |||||||||||||||||| || | ||||| |||||||| |||| ||  ||||||||    
T  33092006 aaaatcctaaggaaacaattacccacgaaggtattacct-gaaacctaaatccttgacaaaatctgcaggaaac 33091934  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 9236967 - 9236896
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttgg 118  Q
    |||||||||| ||| ||| ||||| |||| || |||||||||||||||||| ||||||||||||||||||||    
T  9236967 tttcctgcggatcctaaattcctcgggaatcaattacccacgaaggtattacctgggaacctgaatccttgg 9236896  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 8671003 - 8670938
Alignment:
Q  70 caggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| ||| ||||||||    
T  8671003 caggaaacaattacctacgaaggtattacctgggaaccttaatccttggcaaaatccgcaggaaac 8670938  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 10656089 - 10656177
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    ||||||| || ||| |||||||||||||| || ||| |||||||||||||| ||||||| ||||||  |||| ||| ||| ||||||||    
T  10656089 tttcctgtggatcctaaaatcctcaggaatcaattatccacgaaggtattacctgggaatctgaataattgggaaaatccgcaggaaac 10656177  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 1756756 - 1756854
Alignment:
Q  37 cgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaac 135  Q
    |||||| ||||||  || |||| | ||||||||||| ||||| |||||||| |||||  ||  ||||||||| ||||| ||||||||||| ||||||||    
T  1756756 cgcaggaaagttttatgtggttactaaaatcctcagaaaacaattacccacaaaggttatacatgggaacctaaatccatggcaaattccgcaggaaac 1756854  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 1099759 - 1099808
Alignment:
Q  84 ccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaa 133  Q
    |||||||||||||| |||||||||| |||| |||||||||||| ||||||    
T  1099759 ccacgaaggtattacctgggaacctaaatctttggcaaattccgcaggaa 1099808  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 26641086 - 26641155
Alignment:
Q  35 tccgcaggtaagtttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaa 105  Q
    ||||||||||  |||||||||||| | ||||||||||||||||| ||  |||| ||||||||| |||||||    
T  26641086 tccgcaggtacatttcctgcggtttctaaaatcctcaggaaacaatt-tccactaaggtattacctgggaa 26641155  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 4675131 - 4675039
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaattccacaggaaacgaaa 139  Q
    |||| |||||||| |||||| ||||||||| | |||||||||||| ||||| || || |||| || |||| | ||| ||| |||||| |||||    
T  4675131 tttcttgcggttctcaaaatactcaggaaatatttacccacgaagttattacctaggcacctaaaccctttgaaaaatccgcaggaagcgaaa 4675039  T

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Target: scaffold0655 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 1562 - 1489
Alignment:
Q  47 tttcctgcggttcccaaaatcctcaggaaacagttacccacgaaggtattagctgggaacctgaatccttggcaaa 122  Q
    |||||||||| ||| |||||| | |||||||| |||||||||||||  ||| |||||||||| ||| |||||||||    
T  1562 tttcctgcggatcctaaaatcttaaggaaacaattacccacgaagg--ttatctgggaacctaaattcttggcaaa 1489  T

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