View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8493_low_41 (Length: 211)

Name: NF8493_low_41
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8493_low_41
NF8493_low_41
[»] chr4 (6 HSPs)
chr4 (1-189)||(11786993-11787182)
chr4 (1-189)||(11799160-11799349)
chr4 (69-149)||(3369845-3369927)
chr4 (70-149)||(30627007-30627088)
chr4 (66-118)||(21451454-21451506)
chr4 (67-119)||(37832963-37833015)
[»] chr2 (5 HSPs)
chr2 (69-150)||(31227121-31227204)
chr2 (69-142)||(14289264-14289338)
chr2 (69-119)||(23993721-23993771)
chr2 (75-142)||(31226855-31226924)
chr2 (63-119)||(15392959-15393015)
[»] chr7 (5 HSPs)
chr7 (69-149)||(35828347-35828429)
chr7 (71-149)||(35793375-35793455)
chr7 (63-148)||(27756257-27756344)
chr7 (70-119)||(21939340-21939389)
chr7 (74-118)||(21938119-21938162)
[»] chr5 (5 HSPs)
chr5 (73-142)||(37426695-37426765)
chr5 (70-119)||(20364681-20364730)
chr5 (70-119)||(20369399-20369448)
chr5 (73-119)||(18159714-18159760)
chr5 (70-149)||(38498118-38498199)
[»] scaffold0172 (1 HSPs)
scaffold0172 (71-153)||(9867-9950)
[»] chr3 (6 HSPs)
chr3 (72-148)||(49579147-49579225)
chr3 (70-149)||(3354919-3355000)
chr3 (70-149)||(16883768-16883849)
chr3 (71-149)||(33687948-33688028)
chr3 (69-153)||(50420851-50420937)
chr3 (78-149)||(33687611-33687684)
[»] chr1 (5 HSPs)
chr1 (69-149)||(51690434-51690516)
chr1 (73-142)||(39411894-39411963)
chr1 (70-119)||(10532214-10532263)
chr1 (73-149)||(13575136-13575213)
chr1 (74-153)||(29816402-29816482)
[»] scaffold0092 (1 HSPs)
scaffold0092 (70-142)||(37783-37856)
[»] scaffold0286 (1 HSPs)
scaffold0286 (72-149)||(17639-17718)
[»] chr6 (5 HSPs)
chr6 (74-153)||(1894712-1894791)
chr6 (72-149)||(2164691-2164770)
chr6 (72-149)||(2176324-2176403)
chr6 (68-141)||(12798724-12798798)
chr6 (63-119)||(12766480-12766536)
[»] chr8 (2 HSPs)
chr8 (70-142)||(9498908-9498982)
chr8 (68-124)||(9234741-9234797)
[»] scaffold1088 (1 HSPs)
scaffold1088 (74-149)||(2104-2180)
[»] scaffold0010 (1 HSPs)
scaffold0010 (74-149)||(128149-128226)
[»] scaffold0372 (1 HSPs)
scaffold0372 (66-118)||(119-171)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 11786993 - 11787182
Alignment:
Q  1 cctaacaaaatctgtttccacattccttctctcgcaggatctcccccagttggtagaaccaaatatttaaggcttaatagcagttttgccctcctaaata 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11786993 cctaacaaaatcggtttccacattccttctctcgcaggatctcccccaattggtagaaccaaatatttaaggcttaatagcagttttgccctcctaaata 11787092  T
Q  101 tcagaaagttgcgattttg-cccctggcaaaataaaatacaatacagccctctacgtgtgtaattatgttaattttatttattataaaaa 189  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11787093 tcagaaagttgcgattttgccccctgacaaaataaaatacaatcgagccctctacgtgtgtaattatgttaattttatttattataaaaa 11787182  T

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Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 11799160 - 11799349
Alignment:
Q  1 cctaacaaaatctgtttccacattccttctctcgcaggatctcccccagttggtagaaccaaatatttaaggcttaatagcagttttgccctcctaaata 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11799160 cctaacaaaatcggtttccacattccttctctcgcaggatctcccccaattggtagaaccaaatatttaaggcttaatagcagttttgccctcctaaata 11799259  T
Q  101 tcagaaagttgcgattttg-cccctggcaaaataaaatacaatacagccctctacgtgtgtaattatgttaattttatttattataaaaa 189  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11799260 tcagaaagttgcgattttgccccctgacaaaataaaatacaatcgagccctctacgtgtgtaattatgttaattttatttattataaaaa 11799349  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 3369845 - 3369927
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||| |||||||  || ||||| |||||  ||||||||||||||  |||||  |||||||||||||||| ||||||    
T  3369845 aaggcttaatatcagtttttgccccctaagtatcaagaagttgcgattttggccccctaacaaaataaaatacaattcagccc 3369927  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 30627088 - 30627007
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||||||  || ||||| ||||| |||||| ||||||||  ||| |  |||||||||||||||| ||||||    
T  30627088 aggcttaatagcagttttcaccccctaagtatcaaaaagttacgattttgaccccataacaaaataaaatacaattcagccc 30627007  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 21451454 - 21451506
Alignment:
Q  66 tttaaggcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt 118  Q
    ||||||||||||||||||||||  |||||||| | ||  ||||||||||||||    
T  21451454 tttaaggcttaatagcagttttagcctcctaactttctcaaagttgcgatttt 21451506  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 37833015 - 37832963
Alignment:
Q  67 ttaaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    |||||||||||||||||||||  |||||||| | ||  |||||||||||||||    
T  37833015 ttaaggcttaatagcagttttagcctcctaactttcctaaagttgcgattttg 37832963  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 31227204 - 31227121
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccct 150  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||||||  || ||  ||||||||||||||||||||||||    
T  31227204 aaggtttaatagcagttttggcctcctaaatatcaggaagttgcgattttgaccctctaacaaaataaaatacaatacagccct 31227121  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 14289264 - 14289338
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaat 142  Q
    |||||||||||||||||||  |||||||| |||||  ||||||||||||||  |||||  ||||||||||||||||    
T  14289264 aaggcttaatagcagtttt-tcctcctaagtatcatgaagttgcgattttggccccctaacaaaataaaatacaat 14289338  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 23993721 - 23993771
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    |||||||||||||||||||   | ||||| |||||||||||||||||||||    
T  23993721 aaggcttaatagcagtttttatcccctaagtatcagaaagttgcgattttg 23993771  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 31226855 - 31226924
Alignment:
Q  75 taatagcagttttgccctcctaaatatcagaaagttgcgattttgcccctg--gcaaaataaaatacaat 142  Q
    |||||||||||||| || ||||| ||||||||||||| ||| ||| |||||   ||||||||||||||||    
T  31226855 taatagcagttttggccccctaagtatcagaaagttgagatcttggccctgtaacaaaataaaatacaat 31226924  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 15393015 - 15392959
Alignment:
Q  63 atatttaaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    |||||| ||| |||||||||||||||  ||| ||| ||||| |||||||||||||||    
T  15393015 atattttaggtttaatagcagttttggtctcttaagtatcacaaagttgcgattttg 15392959  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 35828347 - 35828429
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||  | |||  ||||| |||||||||| ||||||    
T  35828347 aaggcttaatagcagttttgacctcttaaatatcagaaagttgcgattttgacctcctaacaaaacaaaatacaattcagccc 35828429  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 35793375 - 35793455
Alignment:
Q  71 ggcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt--gcccctggcaaaataaaatacaatacagccc 149  Q
    |||||||||||||||||| || ||||||| | || |||||||||||||  ||||||  |||||||||||||||| ||||||    
T  35793375 ggcttaatagcagttttggccccctaaattttaggaagttgcgattttaggcccctaacaaaataaaatacaattcagccc 35793455  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 27756257 - 27756344
Alignment:
Q  63 atatttaaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagcc 148  Q
    ||||||||| |||||||||||||||| || | ||| ||| ||  |||||||||||||  |||||  |||||||||||||||| |||||    
T  27756257 atatttaagacttaatagcagttttggccccttaagtattaggtagttgcgattttggccccctaacaaaataaaatacaatccagcc 27756344  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 21939389 - 21939340
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    ||||||||||||||||||| || ||||| |||||  ||||||||||||||    
T  21939389 aggcttaatagcagttttggccccctaagtatcacgaagttgcgattttg 21939340  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 21938119 - 21938162
Alignment:
Q  74 ttaatagcagttttgccctcctaaatatcagaaagttgcgatttt 118  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||    
T  21938119 ttaatagcagttttggcc-cctaaatatcataaagttgcgatttt 21938162  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 37426765 - 37426695
Alignment:
Q  73 cttaatagcagttttgccctcctaaatatcagaaagttgcgatttt-gcccctggcaaaataaaatacaat 142  Q
    |||||||||||||||| || ||||| |||||||||||||| ||||| ||||||  ||||||||||||||||    
T  37426765 cttaatagcagttttggccccctaagtatcagaaagttgcaattttagcccctaacaaaataaaatacaat 37426695  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 20364681 - 20364730
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    ||||||||||||||||||| || ||||| |||||| ||||||||||||||    
T  20364681 aggcttaatagcagttttgtccccctaagtatcaggaagttgcgattttg 20364730  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 20369399 - 20369448
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  20369399 aggcttaatagcagttttgtcccgctaagtatcagaaagttgcgattttg 20369448  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 18159714 - 18159760
Alignment:
Q  73 cttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||||||    
T  18159714 cttaattgcagttttggcctcgtaagtatcagaaagttgcgattttg 18159760  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 38498118 - 38498199
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt--gcccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||||||| || ||||| |||||| ||||||| |||||   |||||   ||||||||||||||| ||||||    
T  38498118 aggcttaatagcagttttgaccacctaagtatcaggaagttgcaattttcgccccctaaaaaaataaaatacaattcagccc 38498199  T

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Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 9950 - 9867
Alignment:
Q  71 ggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg-cccctggcaaaataaaatacaatacagccctcta 153  Q
    |||||||||||||||||| || ||| ||||| || |||||||||||||| |||||   |||||||||||||||  |||||||||    
T  9950 ggcttaatagcagttttgacccccttaatattaggaagttgcgattttgacccctaataaaataaaatacaatctagccctcta 9867  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 49579225 - 49579147
Alignment:
Q  72 gcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt--gcccctggcaaaataaaatacaatacagcc 148  Q
    ||||||||||||||||| || | ||| ||||||||||||||||||||   |||||  |||||||||||||||| |||||    
T  49579225 gcttaatagcagttttgaccccttaagtatcagaaagttgcgattttagtcccctaacaaaataaaatacaattcagcc 49579147  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 3355000 - 3354919
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    |||||||||||||| |||| || ||||| |||||  ||||||||||||||  |||||  |||||||||||||||| ||||||    
T  3355000 aggcttaatagcagatttggccccctaagtatcaagaagttgcgattttggtcccctaacaaaataaaatacaatccagccc 3354919  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 16883849 - 16883768
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||| | ||||| || ||||| |||||||||||||||||||||  |||||  |||| ||||||||||| ||||||    
T  16883849 aggcttaatagtatttttggccccctaagtatcagaaagttgcgattttgaccccctaacaaattaaaatacaatccagccc 16883768  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 33688028 - 33687948
Alignment:
Q  71 ggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    |||||||||||||||||| |   |||| |||||||||||||||||| ||  |||||  |||||||||||||||| ||||||    
T  33688028 ggcttaatagcagttttggctctctaagtatcagaaagttgcgattctgaccccctaacaaaataaaatacaattcagccc 33687948  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 50420937 - 50420851
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccctcta 153  Q
    |||||||||||||||||||| |||||||| ||| |  ||||||||||||||  ||| |  |||||||||| |||||  |||||||||    
T  50420937 aaggcttaatagcagttttggcctcctaagtattatgaagttgcgattttgaccccttaacaaaataaaacacaatctagccctcta 50420851  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 33687611 - 33687684
Alignment:
Q  78 tagcagttttgccctcctaaatatcagaaagttgcgatttt--gcccctggcaaaataaaatacaatacagccc 149  Q
    ||||| ||||| || ||||| ||||||||||||||||||||   |||||  |||||||||||||||| ||||||    
T  33687611 tagcatttttggccccctaagtatcagaaagttgcgattttagccccctaacaaaataaaatacaatccagccc 33687684  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 51690516 - 51690434
Alignment:
Q  69 aaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    |||||||||||| |||||||  |||||||||||| ||||||||||||||||  | | |  |||||||||||||||| ||||||    
T  51690516 aaggcttaatagtagttttgatctcctaaatatccgaaagttgcgattttggcctcgtaacaaaataaaatacaattcagccc 51690434  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 39411963 - 39411894
Alignment:
Q  73 cttaatagcagttttgccctcctaaatatcagaaagttgcgattttg-cccctggcaaaataaaatacaat 142  Q
    |||||| ||||||||| || ||||| ||| ||||||||||||||||| |||||  ||||||||||||||||    
T  39411963 cttaattgcagttttgacc-cctaagtataagaaagttgcgattttgacccctaacaaaataaaatacaat 39411894  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 10532214 - 10532263
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    ||||||||||||||||||| || ||||| ||| || ||||||||||||||    
T  10532214 aggcttaatagcagttttgaccccctaagtattaggaagttgcgattttg 10532263  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 13575213 - 13575136
Alignment:
Q  73 cttaatagcagttttgccctcctaaatatcagaaagttgcgatttt-gcccctggcaaaataaaatacaatacagccc 149  Q
    |||||||||||||||  || ||||| |||||| ||| ||||||||| |||| |  |||||||||||||||| ||||||    
T  13575213 cttaatagcagttttagccccctaagtatcaggaagatgcgattttggcccataacaaaataaaatacaatccagccc 13575136  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 29816482 - 29816402
Alignment:
Q  74 ttaatagcagttttgccctcctaaatatcagaaagttgcgattttgc-ccctggcaaaataaaatacaatacagccctcta 153  Q
    ||||||| ||||||| || | |||||||||  ||||||||||||||  |||   ||||||||||||||||||| |||||||    
T  29816482 ttaatagtagttttgaccccttaaatatcaagaagttgcgattttggtccccaacaaaataaaatacaatacaaccctcta 29816402  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 37783 - 37856
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg-cccctggcaaaataaaatacaat 142  Q
    |||||||| |||||||||  || ||||| |||||| |||||||||||||| |||||  ||||||||||||||||    
T  37783 aggcttaacagcagttttagccccctaagtatcaggaagttgcgattttgacccctaacaaaataaaatacaat 37856  T

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Target: scaffold0286 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 17639 - 17718
Alignment:
Q  72 gcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||||| || ||| | |||||| ||||||||||||||   ||||  |||||||||||||||| ||||||    
T  17639 gcttaatagcagttttggccccctgagtatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagccc 17718  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 1894791 - 1894712
Alignment:
Q  74 ttaatagcagttttgccctcctaaatatcagaaagttgcgattttg-cccctggcaaaataaaatacaatacagccctcta 153  Q
    |||||||||||||||  ||| ||| ||| ||||||||||||||||  |||||  |||||||||||||||| ||||||||||    
T  1894791 ttaatagcagttttgagctc-taagtattagaaagttgcgattttaacccctaacaaaataaaatacaattcagccctcta 1894712  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 2164770 - 2164691
Alignment:
Q  72 gcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||||| || ||| | |||||| ||||||||||||||   ||||  |||||||||||||||| ||||||    
T  2164770 gcttaatagcagttttggccccctgagtatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagccc 2164691  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 2176403 - 2176324
Alignment:
Q  72 gcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||||| || ||| | |||||| ||||||||||||||   ||||  |||||||||||||||| ||||||    
T  2176403 gcttaatagcagttttggccccctgagtatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagccc 2176324  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 12798724 - 12798798
Alignment:
Q  68 taaggcttaatagcagttttgccctcctaaatatcagaaagttgcga-ttttgcccctggcaaaataaaatacaa 141  Q
    ||||||||||||||||||||| || |||| || |||  ||||||||| |||||| |||  |||||||||||||||    
T  12798724 taaggcttaatagcagttttggccccctatatttcaagaagttgcgatttttgctcctaacaaaataaaatacaa 12798798  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 12766536 - 12766480
Alignment:
Q  63 atatttaaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg 119  Q
    |||||||||||||||||||||||||  || ||||| | |||  ||||||||||||||    
T  12766536 atatttaaggcttaatagcagttttcaccccctaactttcacgaagttgcgattttg 12766480  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 9498908 - 9498982
Alignment:
Q  70 aggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaat 142  Q
    |||||||||| |||||||| || ||||| |||||| ||||||||||||||  ||| |  ||||||||||||||||    
T  9498908 aggcttaataacagttttggccccctaagtatcaggaagttgcgattttgaccccataacaaaataaaatacaat 9498982  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 9234797 - 9234741
Alignment:
Q  68 taaggcttaatagcagttttgccctcctaaatatcagaaagttgcgattttgcccct 124  Q
    ||||||||||||| |||||||  | | |||||||||| |||||||||||||| ||||    
T  9234797 taaggcttaatagtagttttgatcccttaaatatcaggaagttgcgattttggccct 9234741  T

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Target: scaffold1088 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 2180 - 2104
Alignment:
Q  74 ttaatagcagttttgccctcctaaatatcagaaagttgcgattttg--cccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||| |||| |||  || |||||||||||||||||  |||||  |||||||||||||||| ||||||    
T  2180 ttaatagcagttttgtcctc-taagcattagaaagttgcgattttggccccctaacaaaataaaatacaattcagccc 2104  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 128226 - 128149
Alignment:
Q  74 ttaatagcagttttgccctcctaaatatcagaaagttgcgatttt--gcccctggcaaaataaaatacaatacagccc 149  Q
    ||||||||||||||| ||  |||| |||||||||||||| |||||  |||| |  |||||||||||||||| ||||||    
T  128226 ttaatagcagttttggccctctaagtatcagaaagttgcaattttgggcccttaccaaaataaaatacaatccagccc 128149  T

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Target: scaffold0372 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 119 - 171
Alignment:
Q  66 tttaaggcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt 118  Q
    ||||||||||||||||||||||  |||||||| | ||  ||||||||||||||    
T  119 tttaaggcttaatagcagttttagcctcctaactttctcaaagttgcgatttt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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