View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_6 (Length: 403)
Name: NF8493_low_6
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 3 - 386
Target Start/End: Complemental strand, 47547550 - 47547167
Alignment:
| Q |
3 |
atggagaagtatattccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtgcttgtctgcaaa |
102 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
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| T |
47547550 |
atggagaagtatattccacatgttttaagcacttatgaagctatgcaagcagataatagaactctcaagatccattcattgcaaggtgcttggcttcaaa |
47547451 |
T |
|
| Q |
103 |
gtagttttaatcatcgagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaa |
202 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47547450 |
gtagttttaatcatccagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaa |
47547351 |
T |
|
| Q |
203 |
gatgtataaaaaagttggtaagccttggaaacgtgggtacctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaaaatat |
302 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47547350 |
gatgtataaaaaagttggcaagccttggaaacgtgggtacctattgcatggacctccaggaacaggaaaatctaccctagttgctgctatggcaaaatat |
47547251 |
T |
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| Q |
303 |
ctgaaatttgatgtgtatgatttggatttaagcggtgtgtatagtaactcagatctcatgagagtcacgaggaacacatctaac |
386 |
Q |
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| T |
47547250 |
ctgaaatttgatgtgtatgatttggatttaagcggtgtgtatagtaactcagatctcatgagagtcatgaggaacacatctaac |
47547167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 8060182 - 8060569
Alignment:
| Q |
1 |
taatggagaagtatattccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtgcttgtctgca |
100 |
Q |
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| T |
8060182 |
taatggagaagtatattccacatgttttaagcccttatgaagctatgcaagcagataatagaactctcaagatccattcattgcaaggtgcttggctaca |
8060281 |
T |
|
| Q |
101 |
aagtagttttaatcatcgagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060282 |
aagtagttttaatcatccagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaa |
8060381 |
T |
|
| Q |
201 |
aagatgtataaaaaagttggtaagccttggaaacgtgggtacctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaaa-- |
298 |
Q |
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| T |
8060382 |
aagatgtataaaaaagttggtaagccttggaaacgtgggtacctattgcatggacctccaggaacaggaaaatctaccctagttgctgctatggcaaaat |
8060481 |
T |
|
| Q |
299 |
atatctgaaatttgatgtgtatgatttggatttaagcggtgtgtatagtaactcagatctcatgagagtcacgaggaacacatctaac |
386 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060482 |
atatctgaaatttgatgtgtatgatttggattcaagcggtgtgtatagtaactcagatctcatgagagtcacgaggaacacatctaac |
8060569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 8051989 - 8052320
Alignment:
| Q |
1 |
taatggagaagtatattccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtg---cttgtct |
97 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||| ||||| |||||||||||| || | || |
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| T |
8051989 |
taatggaaaagtatattccacatgttttaagcacttatgaagctataaaagcaggaaataaaactcttaagattcattcaatgcaatctggaccatggaa |
8052088 |
T |
|
| Q |
98 |
gcaaagtagttttaatcatcgagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggagg |
197 |
Q |
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|||||| ||| | |||| ||||||||||||||| ||||| ||||||||||| |||| || |||||||||||||||||||| |||| ||||||||| |
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| T |
8052089 |
acaaagtgatttaacacatcctgcttcatttgattcacttgctatggatcctgatctaaaaaattctataattgatgatttagatcgatttttgaggagg |
8052188 |
T |
|
| Q |
198 |
aaaaagatgtataaaaaagttggtaagccttggaaacgtgggtacctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaa |
297 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||| || ||||||| ||||||||||| || ||||||||||||||| |
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| T |
8052189 |
aaaaagttgtataaaaaagttggtaagccttggaaacgtggttacttattgtatggtccaccaggaacaggaaaatctagtcttattgctgctatggcaa |
8052288 |
T |
|
| Q |
298 |
aatatctgaaatttgatgtgtatgatttggat |
329 |
Q |
| |
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| ||| |||||||||||||||||||||||||| |
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| T |
8052289 |
agtatttgaaatttgatgtgtatgatttggat |
8052320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 241 - 386
Target Start/End: Complemental strand, 7932178 - 7932031
Alignment:
| Q |
241 |
acctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaaaatat--ctgaaatttgatgtgtatgatttggatttaagcggt |
338 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7932178 |
acctattgcatggacctccaggaacaggaaaatctaccctagttgctgctatggcaaaatatatctgaaatttgatgtgtatgatttggatttaagcggt |
7932079 |
T |
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| Q |
339 |
gtgtatagtaactcagatctcatgagagtcacgaggaacacatctaac |
386 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
7932078 |
gtgtatagtaactcatatctcatgagagtcatgaggaacacatctaac |
7932031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 32360366 - 32360293
Alignment:
| Q |
126 |
tttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaa |
199 |
Q |
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||||| ||| |||||||||| | | || ||||||||| ||||||||||||||||||| ||| ||||||||||| |
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| T |
32360366 |
tttgactcacttgctttggaacgtcatctaaagaaagttataattgatgatttagatcaatttttgaggaggaa |
32360293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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