View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_7 (Length: 397)
Name: NF8493_low_7
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 381
Target Start/End: Original strand, 46960230 - 46960609
Alignment:
| Q |
2 |
atgtttttcttctggcacattacttgacataaagtttattctggatttctacaagacagtaatgaaagtgaataagatgttaaattgccacttagaccat |
101 |
Q |
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| T |
46960230 |
atgtttttcttctggcacattacttgacataaagtttattctggatttctacaagacagtaatgaaagtgaataagatgttaaattgccacttagaccat |
46960329 |
T |
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| Q |
102 |
tatatctttgaagttcggtgaagttaatgttgcattaggttgaagttaactcgcctgtttttacgtcactatgactaatctcaataccctttgttgcact |
201 |
Q |
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| T |
46960330 |
tatatctttgaagttcggtaaagttaatgttgcattaggttgaagttaactcgcctgtttttacgtcactatgactaatctcaataccctttgttgcact |
46960429 |
T |
|
| Q |
202 |
aatgtggattccatcagtattaggactggaggaaggtgctgatacgttgagacgggacacaacaacccgcatacagcgagtgactgcgatgtgcattttt |
301 |
Q |
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| T |
46960430 |
aatgtggattccatcagtattaggactggaggaaggtgctgatacgttgagacgggatacaacaacccgcatacagcgagtgaatgcgatgtgcattttt |
46960529 |
T |
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| Q |
302 |
tggctatttaccaccgtaaggtttctaactttgagactcttgcatctatgaaaagtcagggactgcaatgcaaatgtagt |
381 |
Q |
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| T |
46960530 |
tggctatttaccaccgtaaggtttctaactttgagactcttgcatctatgaaaagttagggactgcaatgcaaatgtagt |
46960609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 362
Target Start/End: Complemental strand, 44521140 - 44520954
Alignment:
| Q |
176 |
ctaatctcaataccctttgttgcactaatgtggattccatcagtattaggactggaggaaggtgctgatacgttgagacgggacacaacaacccgcatac |
275 |
Q |
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| T |
44521140 |
ctaatctcaacaccctttgtagcactaatgtggatgccatcagtattagggctggaggcaggtgctaatactttgagacgtgatgcaacaacccgcatac |
44521041 |
T |
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| Q |
276 |
agcgagtgactgcgatgtgcattttttggctatttaccaccgtaaggtttctaactttgagactcttgcatctatgaaaagtcaggg |
362 |
Q |
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| T |
44521040 |
agctagtgaatgcgatgtgcattttttggctatttagcaccgtaaggtttctgactttgagactcttgcatttatgaaaagtcaggg |
44520954 |
T |
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