View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_8 (Length: 393)
Name: NF8493_low_8
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_8 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 9416299 - 9416665
Alignment:
| Q |
12 |
agattatacttgttggcttaggccaggggttttat---aacacta--atgagaagtaaaaacgtatgacaca---ctaaaggaaataaagtggaattagt |
103 |
Q |
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| T |
9416299 |
agatcatacttgttggcgtaggccaggggttttattataacactataatgagaagtaaaaacgtatgacacatgactaaaggaaataaagtggaattagt |
9416398 |
T |
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| Q |
104 |
aggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagtattaaggagatattaatagtcaacccatttgatttgtagcaaggtgac |
203 |
Q |
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| T |
9416399 |
aggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagtattaaggagatattaatagtcaacccatttgatttgtagcaaggtgac |
9416498 |
T |
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| Q |
204 |
attgaaattgtgtaagggaaggaaggataaatggtgtgtgaatcaaaattgatacctatgaattcaacgactatcagtgaaatgcacttggttgcaatta |
303 |
Q |
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| T |
9416499 |
gttgaaattgtgtaagggaaggaaggataaatggtgtgtgaatcaaaattgatacctataaattcaacgactatcagtgaaatgcacttggttgcaatta |
9416598 |
T |
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| Q |
304 |
ttataagttttgattcagcacctatatcacttttcattcttgccaaaaatggttatatgtatgatgt |
370 |
Q |
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| T |
9416599 |
ttataagttttgattcagcacctatattacttttcattcttgccaaaaatggttatatgtatgatgt |
9416665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 1460819 - 1460719
Alignment:
| Q |
56 |
gagaagtaaaaacgtatgacacactaaaggaaataaagtggaattagtaggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagt |
155 |
Q |
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| T |
1460819 |
gagaagtaaaaccgcattacacactaaaggaaataaagtggaattagtaggaaattaaactggtgattat----tgtggaggacaaaaacgaaatgcagt |
1460724 |
T |
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| Q |
156 |
attaa |
160 |
Q |
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| T |
1460723 |
tttaa |
1460719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 9611 - 9554
Alignment:
| Q |
301 |
ttattataagttttgattcagcacctatatcacttttcattcttgccaaaaatggtta |
358 |
Q |
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| T |
9611 |
ttattataagttttgatccatcacctatgctacttttccttcttgccaaaaatggtta |
9554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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