View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8494_high_2 (Length: 238)
Name: NF8494_high_2
Description: NF8494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8494_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42741090 - 42741307
Alignment:
| Q |
1 |
ttaaagttatgcacctcttgggtaaacatcaactgattacccgatccgaataaccaccgataggatcaagccttcactgccaataatctttacaattatt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
42741090 |
ttaaagttatgctcctcttgggtaaacatcaactgattacccgagccgaataaccaccgatagaattaagccttcactgccaataatctttacaattatt |
42741189 |
T |
|
| Q |
101 |
atgctgcagaagtaaaatcctaccaaaatgttgtatttcctttatagatcagtataaaagatttttattaacggcatatatatttttatttgaaggaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
42741190 |
atgctgcagaagtaaaatcctaccaaaatgttgtatttcctttatagatcagtattgaagatttttattaacggc----atatttttatttgaaggaatt |
42741285 |
T |
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| Q |
201 |
tttaacgttacagtgcttaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42741286 |
tttaacgttacagtgcttaaat |
42741307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21745235 - 21745447
Alignment:
| Q |
1 |
ttaaagttatgcacctcttgggtaaacatcaactgattacccgatccgaataaccaccgataggatcaagccttcactgccaataatctttacaattatt |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
21745235 |
ttaaagttatgcacctcctaggtaaacatcaactgattacccgagccgaataaccaccgataggatcaagcct-----gtcaataatctttacaattatt |
21745329 |
T |
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| Q |
101 |
atgctgcagaagtaaaatcctaccaaaatgttgtatttcctttatagatcagtataaaagatttttattaacggcatatatatttttatttgaaggaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
21745330 |
atgctgcagaagtaaaatcctaccaaaatgttgtatttcctttatagatcagtatagaagatttttattaacggc----atatttttatttgaaggaatt |
21745425 |
T |
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| Q |
201 |
tttaacgttacagtgcttaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21745426 |
tttaacgttacagtgcttaaat |
21745447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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