View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8494_low_3 (Length: 278)
Name: NF8494_low_3
Description: NF8494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8494_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 48022181 - 48021915
Alignment:
| Q |
1 |
ctatatattcttcaaaactttctttcttttgcaaccgtatatgataaaaaacataaaactttcaactgaataaagttttgactgacagagatatatggct |
100 |
Q |
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| T |
48022181 |
ctatatattcttcaaaactttctttcttttgcaaccgtatatgacaaaaaacataaaactttcaactgaataaagttttgactgacagagatatatggct |
48022082 |
T |
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| Q |
101 |
atatgtgtataggtggttgccgtatgagaacgacggtaaggcatgaaaaatgaaaggcgaaacttatgtaattctttttaaataaaaagtgtgatgca-- |
198 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48022081 |
atatgtgtataggtggttgccgtatgagaacgactgtaaggcatgaaaaatgaaaggcgaaacttatgtaattctttttaaataaaaagtgtgatgcata |
48021982 |
T |
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| Q |
199 |
-----tannnnnnngaacaagaaaaagtgtgatgcatattaattcttttttaaacggaaaaactatt |
260 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48021981 |
ttttttatttttttgaacaagaaaaagtgtgatgcatattaattcttttttaaacggaaaaactatt |
48021915 |
T |
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