View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_high_3 (Length: 266)
Name: NF8495_high_3
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 6338883 - 6339132
Alignment:
| Q |
1 |
aacctaaataaaataatataacgttcattagtggctcgatatatctgataagttcagtgattgctgaaatattcacctgaaaatcatgaggattttacct |
100 |
Q |
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| T |
6338883 |
aacctaaataaaataatataacgttcattagtggctcgatatatctgataagttcagtgattgctgaaatattcacctgaaaatcatgaggattttacct |
6338982 |
T |
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| Q |
101 |
cattttgtttaagatcccaatatttaacttgcttatcatcaccagcagaaaacatgtaagtatgtttgttgctaatagcaaggcctgtagagaaagcaca |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6338983 |
cattttgtttaagatcccaacatttaacttgcttatcatcaccagcagaaaacatgtaagtatgtttgttgctaatagcaaggcctgtagagaaagcaca |
6339082 |
T |
|
| Q |
201 |
atgttattattaacccaattcacaattgctgccagcactaataaataatt |
250 |
Q |
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| T |
6339083 |
atgttattattaatccaattcacaattgctgccagcactaataaataatt |
6339132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 14193590 - 14193847
Alignment:
| Q |
1 |
aacctaaataaaataatataacgttcattagtggctcgatatatctgata-agttcagtgattgctgaaatattcacctgaaaatca-----tg-agga- |
92 |
Q |
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||||||||||||| |||||||| | | |||||||| ||||||| ||| ||||| || |||||||||||||||||| ||||| || || |||| |
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| T |
14193590 |
aacctaaataaaacaatataacatgctttagtggccagatatattcaatagagttccgtaattgctgaaatattcaccagaaaaacaaatactgtaggaa |
14193689 |
T |
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| Q |
93 |
ttttacctcattttgtttaagatcccaatatttaacttgcttatcatcaccagcagaaaacatgtaagtatgtttgttgctaatagcaaggcctgtagag |
192 |
Q |
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|||||||| ||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
14193690 |
ttttaccttattctgttcaagatcccaacatttaacttgtttatcatcaccagcagaaaacatgtaggtatgtttgtggctaatagcaaggcctgtagag |
14193789 |
T |
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| Q |
193 |
aaagcacaatgttattattaacccaattcacaattgctgccagcactaataaataatt |
250 |
Q |
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||||||| ||||| || ||||||| |||||||| ||||||| |||| ||||||||| |
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| T |
14193790 |
aaagcacggtgttaatactaacccagttcacaatagctgccacaactattaaataatt |
14193847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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