View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_1 (Length: 607)
Name: NF8495_low_1
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 607
Target Start/End: Complemental strand, 3689689 - 3689087
Alignment:
| Q |
17 |
gtgatatgtctaagagggtgtgtaatgtcagtgcctccagcatgctgcacaaactcagcaggtgaaaatgtgcttccatgacagacacaaacaatgctaa |
116 |
Q |
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| T |
3689689 |
gtgatatgtctaagagggtgtgtaatgtcagtgcctccagcatgctgcacaaactcagcaggtgaaaatgtgcttccatgacagacacaaacaatgctaa |
3689590 |
T |
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| Q |
117 |
cttcatcacattttgaatatctgtataaaaatccattcactactttcccatttggtccattcccttttgttgatacatatggcatttgaggcaaacactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
3689589 |
cttcatcacattttgaatatctgtataaaaatccattcactactttcccatttgatccattcccttttgtggatacatatggcatttgaggcaaagactt |
3689490 |
T |
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| Q |
217 |
cttaattggaattggaatttgatcggtttttgttgccgctgcagcagattgttcattaagttttaagtcttttggtttagtttggattgtttccttcaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||||||||||| |
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| T |
3689489 |
cttaattggaattggaatttgatcggtttttgttgccgctgcagcagattgttcattaagttttatgccatttggttgagtttggattgtttccttcaaa |
3689390 |
T |
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| Q |
317 |
tgagttggttcagcaaatgaattagctgaatggctgcggctgcggctttcggtgctccctccatctgagaaaaaattgacattgatagataatt------ |
410 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3689389 |
tgagttggttctgcaaatgaattagctgaatggctgcggctgcggctttcggtgctccctccatctgagaaaaaattgacattgatagataatttcattc |
3689290 |
T |
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| Q |
411 |
------tcatattggtattcatgtccaaaataaataatttcatcaacttgtatcaagtgagttcaatttttgtttcaaatcaagatatgtatataacaag |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3689289 |
atttattcatattggtattcatgtccaaaataaataatttcatcaacttgtatctagtgagttcaatttttgtttcaaatcaagatatgtatataacaag |
3689190 |
T |
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| Q |
505 |
acgaacacnnnnnnnntgaaagctaggcacattaattatatctggccattgataattcttttttatgaaatctgatatgaagttatgaactataccatca |
604 |
Q |
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| T |
3689189 |
acgaacacaaaaaaaatgaaagctaggcacattaattatatctggccattgataattcttttttatgaaatctgatatgaagttatgaactataccatca |
3689090 |
T |
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| Q |
605 |
tcc |
607 |
Q |
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| T |
3689089 |
tcc |
3689087 |
T |
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