View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_10 (Length: 253)
Name: NF8495_low_10
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3354543 - 3354312
Alignment:
| Q |
1 |
aataataatgacaagcaaacaacaataccagtaagaagtcaaaagaagagtccaacaaggcaaagacgaagcttgaaggcaaaaacaacaccaaggggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3354543 |
aataataatgacaagcaaacaacaataccagtaagaagtccaaagaagagtccaacaaggccaagacgaagcttgaaggcaaaaacaacaccaaggggca |
3354444 |
T |
|
| Q |
101 |
gagccagaaaataaaccccgcctagatttgcatacatacccaaccaaggtcgagctgtccctcgaactatgcctccacaaactgccaatggaaaattaaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3354443 |
gagccagaaaataaaacccgcctagatttgcatacatacccaaccaaggtcgagctgtccctcgaactatacctccacaaactgccaatggaaaattaaa |
3354344 |
T |
|
| Q |
201 |
caattccactagagccatcaacaacattgtct |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
3354343 |
caattccactagagccatcaacaacattgtct |
3354312 |
T |
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