View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_11 (Length: 250)
Name: NF8495_low_11
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2054844 - 2055099
Alignment:
| Q |
1 |
ttacttttttagttgcaaaatatttaagtgaagtatgtggtatatatcnnnnnnnaagcaatatttataacatgttttacttacttgttgtacttaaaag |
100 |
Q |
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| T |
2054844 |
ttacttttttagttgcaaaatatttaagtgaagtatgtggtatatatctttttttaagcaatatttataacatgttttacttacttgttgtacttaaaag |
2054943 |
T |
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| Q |
101 |
aataataaaaaattaaaggtataacag-aaaagtgatattgatg--------------taaaacgacttataatcaaagataattttcacctatatcatt |
185 |
Q |
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||||||||| ||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
2054944 |
aataataaacaattaaaggtataacagaaaaaattatattgatgttatattgttattataaaacgacttataatcaaagataattttctcctatagcatt |
2055043 |
T |
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| Q |
186 |
ttataatttaggacaggtcgagtcgattattatttttacaaacacggtagtattat |
241 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2055044 |
ttataatttaggacagatcgagtcgattattatttttacaaacacggtagtattat |
2055099 |
T |
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