View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_12 (Length: 240)
Name: NF8495_low_12
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 27608293 - 27608516
Alignment:
| Q |
11 |
aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
110 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27608293 |
aggaacacagacatctgcaatgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
27608392 |
T |
|
| Q |
111 |
ctagaaggatgtaac---cagcatagtttccttttgcat-nnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgtt |
206 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27608393 |
ctagaaggatgtaaccagcagcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgtt |
27608492 |
T |
|
| Q |
207 |
ctcaccgttgagctgatgtccatc |
230 |
Q |
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||||||||||||||||||| |||| |
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| T |
27608493 |
ctcaccgttgagctgatgtgcatc |
27608516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 34496749 - 34496968
Alignment:
| Q |
11 |
aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
110 |
Q |
| |
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|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
34496749 |
aggaacacagacatctgcaatgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatccaatgaaaattagtttttc |
34496848 |
T |
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| Q |
111 |
ctagaaggatgtaaccagcatagtttccttttgcatnnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca |
210 |
Q |
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| T |
34496849 |
ctagaaggatgtaaccaacatagtttccttttgcataaaaaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca |
34496948 |
T |
|
| Q |
211 |
ccgttgagctgatgtccatc |
230 |
Q |
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||||||||||||||| |||| |
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| T |
34496949 |
ccgttgagctgatgtgcatc |
34496968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 31505957 - 31505741
Alignment:
| Q |
11 |
aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| || ||||| |||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
31505957 |
aggaacacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtatcaattcaaccgacaaagggaaaatcaaatgaaaattggtttttc |
31505859 |
T |
|
| Q |
111 |
ctagaaggatgtaaccagcatagtttccttttgcatnnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca |
210 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31505858 |
-tagaaggatgtaaccagcatagttgccttttgcataacaga-ctacaatagaatagtttaaagcatcaattaacactaggtaacaaggaaatgttctca |
31505761 |
T |
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| Q |
211 |
ccgttgagctgatgtccatc |
230 |
Q |
| |
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||||||||||||||| |||| |
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| T |
31505760 |
ccgttgagctgatgtgcatc |
31505741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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