View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_14 (Length: 215)
Name: NF8495_low_14
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 26785023 - 26784840
Alignment:
| Q |
17 |
tacttatgccttctttggcttcaatggtaagctcatcacattcctaaaacaatttcatcgattttcctcttcaaaaagaacagtgaagttataataagtt |
116 |
Q |
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| T |
26785023 |
tacttatgccttctttggcttcaatggtaagctcatcacattcctaaaacaatttcatgcattttcctcttcaaaaagaacagtgaagttataataagtt |
26784924 |
T |
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| Q |
117 |
catgcttccttgtggacatggtgctaaattgcgattatattcgccagtagcaaaccttaatattgcgagaaaatatgaaaaaag |
200 |
Q |
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| T |
26784923 |
catgcttcctagtggacatggtgctaaattgcgattatattcgccagtagcaaaccttaatattgcgagaaaatatgaaaaaag |
26784840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 26791225 - 26791147
Alignment:
| Q |
18 |
acttatgccttctttggcttcaatggtaagctcatcacattcctaaaacaatttcatcgattttcctcttcaaaaagaa |
96 |
Q |
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||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||||||| ||||||||||| |
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| T |
26791225 |
acttatgccttctttggcttcaatggtaatctcacctcatgcctaaaacaatttcatcaattttccttttcaaaaagaa |
26791147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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