View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_2 (Length: 514)
Name: NF8495_low_2
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 13 - 496
Target Start/End: Original strand, 36061078 - 36061561
Alignment:
| Q |
13 |
gtaacctaattggtgtcggtttgacaaaaacattgaaaaacaagcagaagtaacnnnnnnntagtaacgatctctcaaaatcatatccattgattagaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36061078 |
gtaacctaattggtgtcggtttgacaaaaacattgaaaaacaagcagaagtaacaaaaaaatagtaacgatctctcaaaatcatatccattgattagaag |
36061177 |
T |
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| Q |
113 |
gcaaacccttatcttttaccatacaaatatcacagtacaaatttaaatagtaacaaacaatcatacaactaaactacaaacagaaggcacaaacaagcaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36061178 |
gcaaacccttatcttttaccatacaaatatcacagtacaaattcaaatagtaacaaacaatcatacaactaaactacaaacagaaggcacaaacaagcaa |
36061277 |
T |
|
| Q |
213 |
tcacattcccacacttaacatgtttcaacttttaataatgaattatttattgttgaaatatctttattcttcatgattatgctgcttcctttactggctt |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36061278 |
tcacattcacacacttaacatgtttcaacttttaataatgaattatttattgttgaaatatcttcattcttcatgattatgctgcttcctttactggctt |
36061377 |
T |
|
| Q |
313 |
aacaaggtttgatgggaaatcaagcagcacaatcttttcaatagctgttgaaaacttttcagagaactcaacatgacttggatggctctgaaatgcagca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36061378 |
aacaaggtttgatgggaaatcaagcagcacaatcttttcaatagctgttgaaaacttttcagagaactcaacatgacttggatggctctgaaatgcagca |
36061477 |
T |
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| Q |
413 |
aaatcttctttcttgttgaatgtcatcaagaaggcatgagtgaaaccttgtctcaacacatctaggctttcaatatcctgtccc |
496 |
Q |
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| T |
36061478 |
aaatcttctttcttgttgaatgtcatcaagaaggcatgagtgaaaccttgtctcaacacatctaggctttcaatatcctgtccc |
36061561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 462
Target Start/End: Complemental strand, 20052532 - 20052498
Alignment:
| Q |
428 |
ttgaatgtcatcaagaaggcatgagtgaaaccttg |
462 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
20052532 |
ttgaatgtcatcaagaaggcatgagtaaaaccttg |
20052498 |
T |
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