View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8495_low_4 (Length: 346)
Name: NF8495_low_4
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8495_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 13940836 - 13941149
Alignment:
| Q |
19 |
gtataagtactcatttttaattaaaccaaagtaatgatacctgagaaatatttacactttcttgaacaaatctttatgtggtctaatcatttctgcacta |
118 |
Q |
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| T |
13940836 |
gtataagtactaatttttaattaaaccaaagtaatgatac-tgagaaatatttacactttcttgaacaaatctttttgtggtctaatcatttctgcacta |
13940934 |
T |
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| Q |
119 |
atacttaagatttgggaattccttttgaatataaaaaatttcatatcaattccttctcgcaaatacacttaaattaaatgtactttataatgggttcaat |
218 |
Q |
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| T |
13940935 |
atacttgagatttaggaatgctttttgaacataaaaaatttcatatcaattccttctcgaaaatatccttaaattaaatgtactttataatggattcaat |
13941034 |
T |
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| Q |
219 |
ttgcaatttgggggacatggtgctaaagctttattttgtaaattaaaaaatcgtatcttatcttataataaagattagtataaagatcccatcagactca |
318 |
Q |
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| T |
13941035 |
ttgcaatttgggggacatggtgctaaagctttattttgtaaattaaaaaatcgtatcttatcttataataaagattagtataaagatcctatcagactca |
13941134 |
T |
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| Q |
319 |
gtcatgaccttatga |
333 |
Q |
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| T |
13941135 |
gtcatgaccttatga |
13941149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 296
Target Start/End: Complemental strand, 4047075 - 4046810
Alignment:
| Q |
31 |
atttttaattaaaccaaagtaatgatacctgagaaatatttacactttcttgaacaaatctttatgtggtctaatcatttctgcactaatacttaagatt |
130 |
Q |
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| T |
4047075 |
atttttaattaaaccaaagtaatgatacctgagaaatatacacactttcttgaacaaatctttttgtggtctaatcatttctgcactaatacttgagatt |
4046976 |
T |
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| Q |
131 |
tgggaattccttttgaatataaaaaatttcatatcaattccttctcgcaaatacacttaaattaaatgtactttataatgggttcaatttgcaatttggg |
230 |
Q |
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| T |
4046975 |
tagggatgctttttgaacataaaaaatttcatatcaattccttctcgaaaatacacttaaattaaatgtactttataatgggttcaatttgcaatttggg |
4046876 |
T |
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| Q |
231 |
ggacatggtgctaaagctttattttgtaaattaaaaaatcgtatcttatcttataataaagattag |
296 |
Q |
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| T |
4046875 |
ggacatggtgctaaagctttattttgtaaattaaaaaatcgtaccttatcttataataaagattag |
4046810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 4073027 - 4072923
Alignment:
| Q |
61 |
gagaaatatttacactttcttgaacaaatctttatgtggtctaatcatttctgcactaatacttaagatttgggaattccttttgaatataaaaaatttc |
160 |
Q |
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| T |
4073027 |
gagagatatttacactttcttgaacaaatctttctgtggtctaatcatttctgcactaat-cttaagatttaggaatgctttttgaacataaaaaatttg |
4072929 |
T |
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| Q |
161 |
atatca |
166 |
Q |
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| T |
4072928 |
atatca |
4072923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 4072887 - 4072833
Alignment:
| Q |
156 |
atttcatatcaattccttctcgcaaatacacttaaattaaatgtactttataatg |
210 |
Q |
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| T |
4072887 |
attttatatcaattccttctctcaaatacacttaaattaaatgtattttataatg |
4072833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 4045942 - 4045897
Alignment:
| Q |
293 |
ttagtataaagatcccatcagactcagtcatgaccttatgagtata |
338 |
Q |
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| T |
4045942 |
ttagtataaagatcctatcagactcagtcatgaccttatgagtata |
4045897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 4072251 - 4072200
Alignment:
| Q |
31 |
atttttaattaaaccaaagtaatgatacctgagaaatatttacactttcttga |
83 |
Q |
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| T |
4072251 |
atttttaattaaagcaaa-taatgatacctgagaaatatttacactttcttga |
4072200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 4072056 - 4071992
Alignment:
| Q |
164 |
tcaattccttctcgcaaatacacttaaattaaatgtactttataatg---ggttcaatttgcaat |
225 |
Q |
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| T |
4072056 |
tcaatttcttccctcaaatacacttaaattaaatgtactatataatgggtggttcaatttgcaat |
4071992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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