View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8495_low_6 (Length: 305)

Name: NF8495_low_6
Description: NF8495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8495_low_6
NF8495_low_6
[»] chr4 (7 HSPs)
chr4 (19-305)||(14173679-14173967)
chr4 (19-305)||(14178433-14178721)
chr4 (19-305)||(44161329-44161616)
chr4 (233-305)||(28607141-28607215)
chr4 (233-305)||(28611903-28611977)
chr4 (232-305)||(11104427-11104499)
chr4 (196-295)||(24726535-24726634)
[»] chr7 (5 HSPs)
chr7 (19-291)||(15302686-15302960)
chr7 (19-280)||(15289979-15290243)
chr7 (232-305)||(37040761-37040836)
chr7 (232-304)||(12098960-12099032)
chr7 (232-305)||(12081973-12082045)
[»] chr5 (3 HSPs)
chr5 (19-305)||(29107210-29107497)
chr5 (119-305)||(42911324-42911513)
chr5 (19-120)||(42911787-42911888)
[»] chr8 (2 HSPs)
chr8 (232-305)||(12930631-12930706)
chr8 (232-305)||(12935377-12935452)
[»] chr1 (1 HSPs)
chr1 (232-305)||(34907094-34907169)
[»] chr2 (1 HSPs)
chr2 (233-304)||(8539139-8539212)
[»] chr3 (1 HSPs)
chr3 (234-305)||(51302118-51302191)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 14173679 - 14173967
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14173679 atggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 14173778  T
119 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttgaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
14173779 tagttttcacacattaaggacatgactttggtgtgaaaggagggcatagcatttaactcttcatcagccgatttcccctataaatagaggggtacttgaa 14173878  T
219 ggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
14173879 ggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 14173967  T

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Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 14178433 - 14178721
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178433 atggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 14178532  T
119 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttgaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
14178533 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagccgatttcccctataaataaaggggtacttgaa 14178632  T
219 ggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
14178633 ggaatgaaatcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 14178721  T

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Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 44161329 - 44161616
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44161329 atggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 44161428  T
119 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44161429 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttgaa 44161528  T
219 ggaatgaaatcaatgaagcagaagtg-aaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    ||||||||  ||  |||||||||||| |||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||    
44161529 ggaatgaaggcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtagaggtgtgtgagaggaataatagagtgttgagtaaatc 44161616  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 28607215 - 28607141
Alignment:
233 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
28607215 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 28607141  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 28611977 - 28611903
Alignment:
233 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
28611977 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 28611903  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 11104427 - 11104499
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||||| ||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
11104427 tgaagcagaagtcaaa-tacaaagcttctatgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatc 11104499  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 24726634 - 24726535
Alignment:
196 ctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgt 295  Q
    |||||||| |||||||| ||||||||| |||| ||   ||| ||||||  |||||||||| |||||| ||||||||||| |||  | ||| |||||||||    
24726634 ctataaattgaggggtatttgaaggaaggaaagcatctaagaagaagttgaaatacaaagcttctgtctgtagaagtgtatgaatgaaaagatagagtgt 24726535  T

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Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 15302686 - 15302960
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
15302686 atggcttagattttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcagtggagcagtttgaaagcatgacataaaata 15302785  T
119 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttgaa 218  Q
    ||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
15302786 tagttttcacacattgaagacatgactttcgtgtgaaaggagtccatagcatttaactcttcatcaactgatttcctctataaatagaggggtacttgaa 15302885  T
219 ggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaataga 291  Q
    ||||||||| ||  ||||||||| ||||||||||||| |||  |||||||||||||||||||||| |||||||||    
15302886 ggaatgaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga 15302960  T

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Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 15289979 - 15290243
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15289979 atggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 15290078  T
119 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttgaa 218  Q
    ||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
15290079 tagttttcacacattgaagacatgactttggtgtgaaagaaatgcatagcatttaactcttcatcaactgatttcctctataaatagaggggtacttgaa 15290178  T
219 ggaatgaaatcaatgaagcagaagtgaaaatac---aaagtttctgtgtgtagaagtgtgtgaga 280  Q
    ||||||||| ||  | |||||||||||||||||   |||| ||||||||||||||||||||||||    
15290179 ggaatgaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgtagaagtgtgtgaga 15290243  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 37040836 - 37040761
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
37040836 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 37040761  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 12098960 - 12099032
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaat 304  Q
    ||||| |||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
12098960 tgaagtagaagtgaaactacaaagtttttgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaat 12099032  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 12081973 - 12082045
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||   ||||| |||||||||| |||||||    
12081973 tgaagcataagtgaagatacaaagttttt-tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatc 12082045  T

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Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 29107497 - 29107210
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||| ||||||||||||||    
29107497 atggcttagtttttcctttcaaatagtttggctatgtataggttgttcagagaacacacatagcttgtggtgaagcagtttgaaaacatgacataaaata 29107398  T
119 tagtttt-cacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagaggggtacttga 217  Q
    ||||||| |||||||| ||||||| ||||||| || |||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||    
29107397 tagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatttaactcatcatcaactgatttcctctataaataaaggggtacttga 29107298  T
218 aggaatgaaatcaatgaagcagaagtgaaaatacaaag--tttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||| ||  |||||||||||| ||||||||||  | ||||| |||||||||||||||||| ||||||  |||||||||||||||    
29107297 aggaatgaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaat--agtgttgagtaaatc 29107210  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 119 - 305
Target Start/End: Complemental strand, 42911513 - 42911324
Alignment:
119 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagag-gggtacttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||    
42911513 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt-ataagctgatttcctctataaatagagagggtacttga 42911415  T
218 aggaatgaaatcaatgaagcagaagtg-aaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||| ||  |||||||||||| |||| |||||| |||  |||||||||||||||||||||| |||||||||||||||||||||||    
42911414 aggaatgaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatc 42911324  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 42911888 - 42911787
Alignment:
19 atggcttagtttttcctttcaaatagtttggctatgtatagattgtgcagagaacacacatagcttgcggtggagcagtttgaaagcatgacataaaata 118  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
42911888 atggcttagtttttcttttcaaatagtttggctatgtataggatgtgcagagaacacacatagcttgcgatggagcagtttgaaagcatgacataaaata 42911789  T
119 ta 120  Q
    ||    
42911788 ta 42911787  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 12930631 - 12930706
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
12930631 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 12930706  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 12935377 - 12935452
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
12935377 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 12935452  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 34907094 - 34907169
Alignment:
232 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
34907094 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 34907169  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 8539139 - 8539212
Alignment:
233 gaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaat 304  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||| |||||||    
8539139 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaat 8539212  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 51302118 - 51302191
Alignment:
234 aagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatc 305  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||| ||||||||||||||| |||||||||||    
51302118 aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatc 51302191  T

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