View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_high_11 (Length: 325)
Name: NF8496_high_11
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 47 - 305
Target Start/End: Original strand, 3724500 - 3724769
Alignment:
| Q |
47 |
tgtcatgaccacatttgtaaataacaaaagatgtagttaatagttatatgcctgacaacttaagaactaaa-----------tgttagatataaaaaaca |
135 |
Q |
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| T |
3724500 |
tgtcatgaccacatttgtaaataacaaaagatgtagttaatagttatatgcttgacagcttaagaactaaacgttaaatacatgttagatataaaaaaca |
3724599 |
T |
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| Q |
136 |
cgcttaacttgccctaacannnnnnnnnngaataaaaatttgccctaacattgcatcttttatatagccaacattttattcattcataggtgatgactta |
235 |
Q |
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||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
3724600 |
cgcttaacttgccctaacattttttttttgaaaaaatttttgccctaacattgcatcttttatatatccaacattttatccattcataggtgatgactta |
3724699 |
T |
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| Q |
236 |
cattctagttaaatacaaaacctgaatacaagtagattttacactagtagtcgggtgtgtatgttagtag |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3724700 |
cattctagttaaatacaaaacctgaatacaagtagattttacactagtagtcgtgtgtgtatgttagtag |
3724769 |
T |
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