View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8496_high_12 (Length: 315)
Name: NF8496_high_12
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_high_12 |
 | |
|
| [»] scaffold0734 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0734 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 369 - 669
Alignment:
| Q |
1 |
attttgaatcaaggcattgattgcgactcgtagttgttaagtcaaaaattgaggagcatgcagcatcaatatatacaagaaacatttttgggaagtttca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
369 |
attttgaatcaaggcatcgattgcgactcgtagttgttaagtcaaaaattgaggagcatgcagcatcaatatatacaagaaacatttttgggaagtttca |
468 |
T |
|
| Q |
101 |
cgatgagtttataaagattattcaatttaggagggaaaaacttgaaaaagtagggtctcagtataaatataaggtatctaatgattatgactcgaaagac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
469 |
cgatgagtttataaagattattcaatttaggagggaaaaacttgaaaaataagggtctcagtataaatataaggtatctaatgattatgactcgaaagac |
568 |
T |
|
| Q |
201 |
acattcatagtttgtgtggatctagagacaaaggttgctacttgtgactgccagctttttcaatttatgggattgctatgtaggcatatcttggtgattt |
300 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
569 |
acattcatagtttgtgtgaatctggagacaaaggttgctacttgtgactgtcagctttttcaattgatgggattgctatgtaggcatatcttggtgattt |
668 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
669 |
t |
669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 32097486 - 32097731
Alignment:
| Q |
11 |
aaggcattgattgcgactcgtagttgttaagtcaaaaattgaggagcatgcagcatcaatatatacaagaaacatttttgggaagtttcacgatgagttt |
110 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
32097486 |
aaggcatcgattgcgactcgtaattgttaagtcaaaaattgaggagcatgcagcatcaatatatacaagaaacatttttgggaagttttatgatgagttt |
32097585 |
T |
|
| Q |
111 |
ataaagattattcaatttaggagggaaaaacttgaaaaagtagggtctcagtataaatataaggtatctaatgattatgactcgaaagacacattcatag |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32097586 |
ataaagattattcaatttaggaaggaaaaacttgaaaaagaagggtctccgtatagatataaggtatctaatgattatgactcgaaagacacattcatag |
32097685 |
T |
|
| Q |
211 |
tttgtgtggatctagagacaaaggttgctacttgtgactgccagct |
256 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32097686 |
tttgtgtggatctggagacaaaggttgctaattgtgactgccagct |
32097731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 52410448 - 52410518
Alignment:
| Q |
37 |
ttaagtcaaaaattgaggagcatgcagcatcaatatatacaagaaacatttttgggaagtttcacgatgag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
52410448 |
ttaagtcaaaaattgaggagcatgcagcatcgatttatacaagaaccatgtttggaaagtttcatgatgag |
52410518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 7775267 - 7775197
Alignment:
| Q |
37 |
ttaagtcaaaaattgaggagcatgcagcatcaatatatacaagaaacatttttgggaagtttcacgatgag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
7775267 |
ttaagtcaaaaattgaggagcatgcagcgtcgatttatacaagaaccatgtttggaaagtttcatgatgag |
7775197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University