View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8496_high_13 (Length: 311)

Name: NF8496_high_13
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8496_high_13
NF8496_high_13
[»] chr5 (3 HSPs)
chr5 (3-303)||(3522456-3522756)
chr5 (8-118)||(26449072-26449190)
chr5 (22-59)||(39466671-39466708)
[»] chr8 (1 HSPs)
chr8 (3-109)||(32897622-32897736)
[»] chr2 (3 HSPs)
chr2 (4-60)||(29463290-29463346)
chr2 (8-40)||(1529388-1529420)
chr2 (77-109)||(13527103-13527135)
[»] chr1 (3 HSPs)
chr1 (8-59)||(42471282-42471333)
chr1 (19-63)||(30210222-30210265)
chr1 (8-40)||(47666584-47666616)
[»] scaffold0474 (1 HSPs)
scaffold0474 (3-59)||(11330-11386)
[»] chr7 (2 HSPs)
chr7 (63-109)||(42078145-42078191)
chr7 (3-64)||(28109304-28109365)
[»] chr4 (2 HSPs)
chr4 (7-109)||(26619934-26620044)
chr4 (8-61)||(34667161-34667214)
[»] scaffold0377 (1 HSPs)
scaffold0377 (63-118)||(11935-11990)
[»] chr3 (2 HSPs)
chr3 (63-118)||(40417622-40417677)
chr3 (73-109)||(45818038-45818073)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 3522456 - 3522756
Alignment:
Q  3 atataattagaaaatagataaagatatgatatgatagtaacatgatagacatttatcctattggtgcatgcatgataagaaagatgataacattatttta 102  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  3522456 atataattagaaaatagataaagatataatatgatagtaacatgataaacatttatcctattggtgcacgcatgataaaaaagatgataacattatttta 3522555  T
Q  103 tcctatcgtgtctttgggtacacacttattatgataagaaaaaattaacaacactgccatctccaccgtgtgcaaaagccaattgaaattgattgggaac 202  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  3522556 tcctatcgtgtgtttggatacacacttattatgataagaaaaaattaacaacgctgccacctccaccgtgtgcaacagccaattgaaattgattgggaac 3522655  T
Q  203 agaaaattcatatcctaattatgtgtgttttagttaaatcaaattgggaatcaattctctaatcgaccgagagtgagaagcacggtactttggaatgaga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||    
T  3522656 agaaaattcatatcctaattatgtgtgttttagttaaatcaaattgggaatcaattctttaatcgaccgagagtgagaagcaaggacctttggaatgaga 3522755  T
Q  303 g 303  Q
    |    
T  3522756 g 3522756  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 26449190 - 26449072
Alignment:
Q  8 attagaaaatagataaagatatgatatgatagtaacatgatagacatttatccta--------ttggtgcatgcatgataagaaagatgataacattatt 99  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||        ||||||||   |||||||||||||||||| |||||||    
T  26449190 attagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcatgcttttggtgcacatatgataagaaagatgatatcattatt 26449091  T
Q  100 ttatcctatcgtgtctttg 118  Q
    |||||||||| ||| ||||    
T  26449090 ttatcctatcatgtgtttg 26449072  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 39466708 - 39466671
Alignment:
Q  22 aaagatatgatatgatagtaacatgatagacatttatc 59  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  39466708 aaagatatgatatgatagtaacaggatatacatttatc 39466671  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 32897736 - 32897622
Alignment:
Q  3 atataattagaaaatagataaagatatgatatgatagtaacatgatagacatttatccta--------ttggtgcatgcatgataagaaagatgataaca 94  Q
    |||| |||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||        ||||||||   ||||||||||||| |||||||    
T  32897736 atatgattagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacgtttggtgcagatatgataagaaagaggataaca 32897637  T
Q  95 ttattttatcctatc 109  Q
    || ||||||||||||    
T  32897636 tttttttatcctatc 32897622  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 29463346 - 29463290
Alignment:
Q  4 tataattagaaaatagataaagatatgatatgatagtaacatgatagacatttatcc 60  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||    
T  29463346 tataattagaaaatagatgaagataagatatgatagtgacatgataaacatttatcc 29463290  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 1529388 - 1529420
Alignment:
Q  8 attagaaaatagataaagatatgatatgatagt 40  Q
    |||||||||| ||||||||||||||||||||||    
T  1529388 attagaaaatggataaagatatgatatgatagt 1529420  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 13527103 - 13527135
Alignment:
Q  77 ataagaaagatgataacattattttatcctatc 109  Q
    |||||||| ||||||||||||||||||||||||    
T  13527103 ataagaaatatgataacattattttatcctatc 13527135  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 42471282 - 42471333
Alignment:
Q  8 attagaaaatagataaagatatgatatgatagtaacatgatagacatttatc 59  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  42471282 attagaaaatagataaagatatgatatgataatgatatgatagacatttatc 42471333  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 30210265 - 30210222
Alignment:
Q  19 gataaagatatgatatgatagtaacatgatagacatttatcctat 63  Q
    |||||||||||||||||||| | |||||||| |||||||||||||    
T  30210265 gataaagatatgatatgataatgacatgata-acatttatcctat 30210222  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 47666584 - 47666616
Alignment:
Q  8 attagaaaatagataaagatatgatatgatagt 40  Q
    ||||||||||||||||||||| |||||||||||    
T  47666584 attagaaaatagataaagataggatatgatagt 47666616  T

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Target: scaffold0474 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 11386 - 11330
Alignment:
Q  3 atataattagaaaatagataaagatatgatatgatagtaacatgatagacatttatc 59  Q
    ||||||||||||||| |||||||||||  ||||||||| |||||||| |||||||||    
T  11386 atataattagaaaattgataaagatatagtatgatagtgacatgataaacatttatc 11330  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 42078191 - 42078145
Alignment:
Q  63 ttggtgcatgcatgataagaaagatgataacattattttatcctatc 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  42078191 ttggtgcacgcatgataagaaatatgataacattattttatcatatc 42078145  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 28109365 - 28109304
Alignment:
Q  3 atataattagaaaatagataaagatatgatatgatagtaacatgatagacatttatcctatt 64  Q
    ||||||| ||||| | |||||||||| |||||||||||||| | ||| ||||||||| ||||    
T  28109365 atataataagaaactggataaagataagatatgatagtaacgtaataaacatttatcatatt 28109304  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 26619934 - 26620044
Alignment:
Q  7 aattagaaaatagataaagatatgatatgatagtaacatgatagacatttatcct--------attggtgcatgcatgataagaaagatgataacattat 98  Q
    |||||||||||  ||||  ||| ||||||||| ||||||||||||||||||||||         ||| |||||||||||||| ||| |||||| ||||||    
T  26619934 aattagaaaatgaataagaataggatatgataataacatgatagacatttatcctttcatgcatttgatgcatgcatgataaaaaatatgatagcattat 26620033  T
Q  99 tttatcctatc 109  Q
    |||||| ||||    
T  26620034 tttatcttatc 26620044  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 34667214 - 34667161
Alignment:
Q  8 attagaaaatagataaagatatgatatgatagtaacatgatagacatttatcct 61  Q
    |||| ||||| |||||||||| ||||||||||| |||||||| | |||||||||    
T  34667214 attaaaaaatggataaagataggatatgatagtgacatgataaatatttatcct 34667161  T

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Target: scaffold0377 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 11990 - 11935
Alignment:
Q  63 ttggtgcatgcatgataagaaagatgataacattattttatcctatcgtgtctttg 118  Q
    |||||||| |||||||| |||| ||||||||||||||||||| |||| ||| ||||    
T  11990 ttggtgcacgcatgataggaaatatgataacattattttatcatatcatgtttttg 11935  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 40417677 - 40417622
Alignment:
Q  63 ttggtgcatgcatgataagaaagatgataacattattttatcctatcgtgtctttg 118  Q
    |||||||| ||||||||||||| |||||| |||||||||||| |||| ||| ||||    
T  40417677 ttggtgcacgcatgataagaaatatgatagcattattttatcatatcatgtgtttg 40417622  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 45818038 - 45818073
Alignment:
Q  73 catgataagaaagatgataacattattttatcctatc 109  Q
    |||||||||||||| ||||||||||||||||||||||    
T  45818038 catgataagaaaga-gataacattattttatcctatc 45818073  T

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