View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8496_high_6 (Length: 403)
Name: NF8496_high_6
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 43612801 - 43613133
Alignment:
| Q |
1 |
ccatctttgttaaaactctctgcatctccagcccatttgtatagtcctgatttctggaaatctgccattgatggataggactgcaagtaaattcaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612801 |
ccatctttgttaaaactctctgcatctccagcccatttgtatagtcctgatttctggaaatctgccattgatggataggactgcaagtaaattcaccaat |
43612900 |
T |
|
| Q |
101 |
tcaatgttaaaaccatcaactgatcaaacaagaaaccagtaataaaattatatg-aagtacagacacatgcacgatataacactaacacatgttagacat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
43612901 |
tcaatgttaaaaccatcaactgatcaaacaagaaatcagtaataaaattatatgtaagtacagacacatacacgatatgacactgacacatgttagacat |
43613000 |
T |
|
| Q |
200 |
taaacgcactttcatttgaagtgttgatgctacatcggtaaaattatattttaagttgaaaacacagatcctagaattatgctacatcttcctaatgatt |
299 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43613001 |
tagacgcactttcatttgaagtgttgatgctacatccgtaaaattatattttaagttgaaaacacagatcctagagttatgctacatcttcctaatgatt |
43613100 |
T |
|
| Q |
300 |
atcccaatactactattttagaagcattaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43613101 |
atcccaatactactattttagaagcattaaaat |
43613133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 43613205 - 43613280
Alignment:
| Q |
328 |
aaaatcaggagcatgggctaccagaaagattaattttaaattgcagtaatgatcaatcatcagaataatctaccca |
403 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
43613205 |
aaaatcaggggcatgggctaccagaaggattagttttaaattgcagtaatgatcaatcatcataataatctcccca |
43613280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University