View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_high_8 (Length: 387)
Name: NF8496_high_8
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 4543694 - 4543335
Alignment:
| Q |
18 |
aaagtcaagaacctttatacgagattctggaaccgattttgctaagctgacaagagattcaatcaagaacacaaatctagctttaggacaaaatagttca |
117 |
Q |
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| T |
4543694 |
aaagtcaagaacctatatacgagattctggaaccgattttgctaagctgacaagagattcaatcaagaacacaaatctagctttaggacaaaatagttca |
4543595 |
T |
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| Q |
118 |
ttttgtcgacagtgtaagatttttcgtatgcttttagccggttgatattttccctttcccttattttttgtaaaaataaaattgtgtactaatctatctt |
217 |
Q |
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| T |
4543594 |
ttttgtctacagtgtaagatttttcgtatgcttttagccggttgatattttccctttcccttattttttgtaaaaataaaattgtgtactaatctatctt |
4543495 |
T |
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| Q |
218 |
atgttgtacaagttagtttgaaggagtactctctagttattagggctaaagcttgagatgctagttcacgagttctctatcactttttatggaatcattg |
317 |
Q |
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| T |
4543494 |
atgttgtacaagttagtttgaaggagtactctctagttatcagggctaaagcttgagatgctagttcacgagttctctatcactttttatggaatcattg |
4543395 |
T |
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| Q |
318 |
ttgtctagagctagtgtatgttgtatttccacacatttttgagtctaattttgattcatct |
378 |
Q |
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| T |
4543394 |
ttgtctagagctagtgtatgttgtatttccacaca-ttttgagtctaattttgattcatct |
4543335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 256
Target Start/End: Original strand, 31241817 - 31242049
Alignment:
| Q |
34 |
atacgagattctggaaccgattttgctaagctgacaagagattcaatcaagaacacaaatctagctttaggacaaaatagttcattttgtcgacagtg-- |
131 |
Q |
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| T |
31241817 |
atacgggattctggaaccgtttctgctaatctgacacgagattcaatcaagaagataactccagctttaggccaaaaaagtttatattgtcgacaatgtg |
31241916 |
T |
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| Q |
132 |
-taagatttttcgtatgcttttagccggttga--tattttccctttcccttattttttgt-----aaaaataaaattgtgtactaatctatcttatgttg |
223 |
Q |
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| T |
31241917 |
ataagattttttgcatgtttttggtcggttaaagtattttcccctttccttaatttttttcaaaaaaaaaaaaaaatgtgtactaatctttcttatgttg |
31242016 |
T |
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| Q |
224 |
tacaagttagtttgaaggagtactctctagtta |
256 |
Q |
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| T |
31242017 |
tacaggttattttgaaggagaacactctagtta |
31242049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 271
Target Start/End: Complemental strand, 4881056 - 4880852
Alignment:
| Q |
71 |
gagattcaatcaagaacacaaatctagctttaggacaaaatagttcattttgtcgacagtgt---aagatttttcgtatgcttttagccggttgatattt |
167 |
Q |
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| T |
4881056 |
gagattcaatcaagaagataactctagctttaggccaaaacagttcattttgtcgggggtttgataagatttttcacacgcttttggtcagtggatattt |
4880957 |
T |
|
| Q |
168 |
tccctttcccttattttttgtaaaaataaa-attgtgtactaatctatcttatgttgtacaagttagtttgaaggagtactctctagttattagggctaa |
266 |
Q |
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| T |
4880956 |
caccctacccttactttttaaaataatccgtattgtgtcgtaatctttcatatgttgtacaggtaagtttgaaggagaattctccagttattagggctaa |
4880857 |
T |
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| Q |
267 |
agctt |
271 |
Q |
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||||| |
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| T |
4880856 |
agctt |
4880852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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