View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_high_9 (Length: 386)
Name: NF8496_high_9
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 27514779 - 27514410
Alignment:
| Q |
7 |
aagaacaaataaaaaatctcaaatgtaagaaggatgtaagttgtaactaaatatttgatgatgccaatgagttgtgctttatgaaggagagaggaagtgt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514779 |
aagaacaaataaaaaatctcaaatgtaagaaggatgtaagttttaactaaatacttgatgatgccaatgagttgtgctttatgaaggagagaggaagtgt |
27514680 |
T |
|
| Q |
107 |
atttatagattttgaagttctctcagaaccaaatttcaagagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514679 |
atttatagattttgaagttctctcagaaccaaatttcaagagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtg |
27514580 |
T |
|
| Q |
207 |
ttgtctaagagtgtaccctaccttcttaaac-aatgtccaatacaaagcttccacttgctaccaaatgagatgtgcaacctcatatttgttgatgattta |
305 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||| |
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| T |
27514579 |
ttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgt-cagcctcatatttcttcatgattta |
27514481 |
T |
|
| Q |
306 |
attggtgtacttcataatgtttgaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
376 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514480 |
attggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 373
Target Start/End: Original strand, 27468580 - 27468957
Alignment:
| Q |
7 |
aagaacaaataaaaaatctcaaatgtaagaaggatgtaagttgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagt |
104 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||| |
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| T |
27468580 |
aagaacaaataaaaaatctcaaatgtaaaaaggatgtaagttgaaactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagt |
27468679 |
T |
|
| Q |
105 |
gtatttatagattttgaagttctctcagaaccaaatttcaagagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtgg |
204 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27468680 |
gtatttatagattttgaagttctctcaaaatcaaatttcaacaaaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtgg |
27468779 |
T |
|
| Q |
205 |
tgttgtctaagagtgtaccctaccttcttaaac-aatgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgt |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |
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| T |
27468780 |
tgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtgctcaagtgcagcctcatatttct |
27468879 |
T |
|
| Q |
296 |
tgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttctgcattatgataatgctgatgt |
373 |
Q |
| |
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| |||||||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||||||||| ||||| |
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|
| T |
27468880 |
tcatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgt |
27468957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 48 - 373
Target Start/End: Original strand, 27475854 - 27476187
Alignment:
| Q |
48 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27475854 |
tgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaa |
27475953 |
T |
|
| Q |
146 |
gagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctacc-ttcttaaacaatgtcc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||| ||| |||||||||||| |
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|
| T |
27475954 |
gagaaactattattgaagggtttgatggatagagagcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtcc |
27476053 |
T |
|
| Q |
245 |
aatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgc |
336 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||| | | | ||||| || || ||||| |
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|
| T |
27476054 |
aatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaagcatgc |
27476150 |
T |
|
| Q |
337 |
tttagacatgttttctgcattatgataatgctgatgt |
373 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| ||||| |
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| T |
27476151 |
ttcagacatgttttcttcattatgataatgccgatgt |
27476187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 27524412 - 27524041
Alignment:
| Q |
7 |
aagaacaaataaaaaatctcaaatgtaagaaggatgtaagttgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagt |
104 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||| | || || ||||||||||||||||| |
|
|
| T |
27524412 |
aagaacagagaaaaaatctcaaatgtatgaaggatgtaa-------ctaaatatttgataatgc-aatgagtttttctgtttgtgaaggagagaggaagt |
27524321 |
T |
|
| Q |
105 |
gtatttatagattttgaagttctctcagaaccaaatttcaagagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtgg |
204 |
Q |
| |
|
||| |||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||| |
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|
| T |
27524320 |
ttatatatagattttaaagttctctcaaacccaaatttcaagaaaaactattattgaaggggttgaaggatatagatcatagggataaggtagcatgtgg |
27524221 |
T |
|
| Q |
205 |
tgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgtt |
296 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||| || |
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| T |
27524220 |
tgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgtgctcaagtgcaacgtcatatttctt |
27524121 |
T |
|
| Q |
297 |
gatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
376 |
Q |
| |
|
|||||||||||||| | ||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27524120 |
catgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 27508721 - 27508488
Alignment:
| Q |
48 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaa |
145 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||| |||| |||| | | |
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|
| T |
27508721 |
tgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctcaaaacccaattccta |
27508622 |
T |
|
| Q |
146 |
gagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaatgtcca |
245 |
Q |
| |
|
|| ||||||||||||||||| | || ||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
27508621 |
gaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaacaatgtcca |
27508522 |
T |
|
| Q |
246 |
atacaaagcttccacttgctaccaaatgagatgt |
279 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
27508521 |
atacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 48 - 376
Target Start/End: Complemental strand, 27503777 - 27503442
Alignment:
| Q |
48 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaa |
145 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| ||||||||| ||||| |||| |||| | | |
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|
| T |
27503777 |
tgtaattaagtatttgatgatgc-aatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctcaaaacccaattccta |
27503679 |
T |
|
| Q |
146 |
gagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctacc-ttcttaaacaatgtcc |
244 |
Q |
| |
|
|| ||||||||||||||||| | || ||||||||| ||||||||||| || ||||||||||||||| ||||||| ||||||| ||| |||||||||||| |
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|
| T |
27503678 |
gaaaaactattattgaaggggtggaaggatagagatcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaatgtcc |
27503579 |
T |
|
| Q |
245 |
aatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgc |
336 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||| | | | ||||| || |||||||| |
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|
| T |
27503578 |
aatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaaacatgc |
27503482 |
T |
|
| Q |
337 |
tttagacatgttttctgcattatgataatgctgatgtcca |
376 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
27503481 |
ttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 27517448 - 27517369
Alignment:
| Q |
198 |
catgtggtgttgtct-aagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
276 |
Q |
| |
|
||||||| ||||||| |||| ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
27517448 |
catgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 376
Target Start/End: Complemental strand, 27489723 - 27489628
Alignment:
| Q |
279 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
376 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||| |||| || |||||||||||||||||||||||| |||||||| |||| |||||||| |
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|
| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
315 |
cttcataatgtttgaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
376 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 27556974 - 27557021
Alignment:
| Q |
329 |
aaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
376 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||| |||| |
|
|
| T |
27556974 |
aaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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