View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8496_low_1 (Length: 843)
Name: NF8496_low_1
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 24359709 - 24360136
Alignment:
| Q |
18 |
ataaattgatgagctaggtagaaaagtgaagtgaacctgtttccaagaagggaatgcaaatggatgatatgttcttcttcctgtggtgagaatgcaccac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359709 |
ataaattgatgagctaggtagaaaagtgaagtgaacctgtttccaagaagggaatgcaaatgaatgatatgttcttcttcctgtggtgagaatgcaccac |
24359808 |
T |
|
| Q |
118 |
gtttaagatcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttgcaatccagcatttctagcaacatcactccaacaaccttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359809 |
gtttaagatcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttgcaatccagcatttctagcaacatcactccaacaaccttg |
24359908 |
T |
|
| Q |
218 |
tccactatttaacatatagttcataagcttctcatcttcctctggtgaccacaatccttttctaagtttattgtttgtgttgttttttccagatgcaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359909 |
tccactatttaacatatagttcataagcttctcatcttcctctggtgaccacaatccttttctaagtttattgtttgtgttgttttttccagatgcaata |
24360008 |
T |
|
| Q |
318 |
tctggcttcctcattgtactattgaatccttcaccctcaccttgatgtagagatgaaagaattaggatttataaagagaaagtatatgtatatatataat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360009 |
tctggcttcctcattgtactattgaatccttcaccctcaccttgatgtagagatgaaagaattaggatttataaagagaaagtatatgtatatatataat |
24360108 |
T |
|
| Q |
418 |
aataagaaagaagcttcatagggtggga |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24360109 |
aataagaaagaagcttcatagggtggga |
24360136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 24360164 - 24360262
Alignment:
| Q |
473 |
gttgtggggtttgcttacaaattagggaagagtagtgagagagaaacagaaagaggagttggttggttgatgagtctagttgaaaaagaaaacggtttg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360164 |
gttgtggggtttgcttacaaattagggaagagtagtgagagagaaacagaaagaggagttggttggttgatgagtctagttgaaaaagaaaacggtttg |
24360262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 768 - 819
Target Start/End: Original strand, 24360499 - 24360550
Alignment:
| Q |
768 |
caactttgttttataatgaagccaagttatttgcttccacttcacataatga |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360499 |
caactttgttttataatgaagccaagttatttgcttccacttcacataatga |
24360550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 605 - 652
Target Start/End: Original strand, 24360300 - 24360347
Alignment:
| Q |
605 |
aatatttagatgtgtgtgtgtcttcttgtctttgactccatggccttg |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360300 |
aatatttagatgtgtgtgtgtcttcttgtctttgactccatggccttg |
24360347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 681 - 725
Target Start/End: Original strand, 24360376 - 24360420
Alignment:
| Q |
681 |
cttcactcacaaggtaatcatcatacatgaatcacagtgtgccag |
725 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24360376 |
cttcactcacaaggtaatcatcatacatgaatcacagtgtgccag |
24360420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 43560553 - 43560606
Alignment:
| Q |
125 |
atcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttg |
178 |
Q |
| |
|
|||||||||||| || || |||||||| || |||||||| |||||||||||||| |
|
|
| T |
43560553 |
atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg |
43560606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 52 - 283
Target Start/End: Original strand, 41831719 - 41831950
Alignment:
| Q |
52 |
acctgtttccaagaagggaatgcaaatggatgatatgttcttcttcctgtggtgagaatgcaccacgtttaagatcaggcctcaagtaattgatccatct |
151 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||| |||||||||| |||| |||||| ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
41831719 |
acctgtttccaagtagagaatggaaatggatgatgagttcttcttcttgtgttgagaaagcacctcttttaagatcaggcctcaagtaattgatccatct |
41831818 |
T |
|
| Q |
152 |
taacctacaactttttccacatctttgcaatccagcatttctagcaacatcactccaacaaccttgtccactatttaacatatagttcataagcttctca |
251 |
Q |
| |
|
|| |||||||||||| |||||||||| ||||||||||||||| || |||||||||||||| ||||||||| | | | ||||||||||||||| |||||| |
|
|
| T |
41831819 |
tagcctacaacttttgccacatctttccaatccagcatttcttgccacatcactccaacatccttgtccattcctaaccatatagttcataagtttctca |
41831918 |
T |
|
| Q |
252 |
tcttcctctggtgaccacaatccttttctaag |
283 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |
|
|
| T |
41831919 |
tcttcttctggtgaccacaaaccttttctaag |
41831950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 42788996 - 42789103
Alignment:
| Q |
114 |
ccacgtttaagatcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttgcaatccagcatttctagcaacatcactccaacaac |
213 |
Q |
| |
|
|||||||| | |||||| || || ||||| |||||||| ||||| ||||||||||||||||| |||| ||| ||| | ||| ||| ||||||||||| |
|
|
| T |
42788996 |
ccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcagtcctgcaagtttagggacagaactccaacaac |
42789095 |
T |
|
| Q |
214 |
cttgtcca |
221 |
Q |
| |
|
| |||||| |
|
|
| T |
42789096 |
catgtcca |
42789103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 41832434 - 41832479
Alignment:
| Q |
772 |
tttgttttataatgaagccaagttatttgcttccacttcacataat |
817 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
41832434 |
tttgttttataaccaagctaagttttttgcttccacttcacataat |
41832479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 277
Target Start/End: Complemental strand, 9232074 - 9231849
Alignment:
| Q |
52 |
acctgtttccaagaagggaatgcaaatggatgatatgttcttcttcctgtggtgagaatgcaccacgtttaagatcaggcctcaagtaattgatccatct |
151 |
Q |
| |
|
||||||| ||||||| ||| || ||||| ||||| ||||||| || ||||| || || || || || ||||||||||| ||||||||||| ||||| | |
|
|
| T |
9232074 |
acctgttgccaagaatggagtggaaatgaatgatgagttcttcctcttgtggcgaaaacgcgccgcgcttaagatcaggtctcaagtaattaatccaacg |
9231975 |
T |
|
| Q |
152 |
taacctacaactttttccacatctttgcaatccagcatttctagcaacatcactccaacaaccttgtccactatttaacatatagttcataagcttctca |
251 |
Q |
| |
|
| | ||||||||| ||||||||||| | |||||||| ||||||| |||||||||||||||||||| || ||| |||||| | | | ||||||| |
|
|
| T |
9231974 |
aagacgacaacttttgccacatctttgaagaccagcattcctagcaatgtcactccaacaaccttgtcctttagttatcatatatcttaccaacttctca |
9231875 |
T |
|
| Q |
252 |
tcttcctctggtgaccacaatccttt |
277 |
Q |
| |
|
|||||||| |||||||| || ||||| |
|
|
| T |
9231874 |
tcttcctcaggtgaccataacccttt |
9231849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 37962950 - 37962862
Alignment:
| Q |
93 |
tcttcctgtggtgagaatgcaccacgtttaagatcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttgcaa |
181 |
Q |
| |
|
||||| ||| |||||||||| || | ||| | |||||||||||||||||| |||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
37962950 |
tcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaa |
37962862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 5843139 - 5843181
Alignment:
| Q |
138 |
taattgatccatcttaacctacaactttttccacatctttgca |
180 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
5843139 |
taatttatccatcttaatctacaactttttccacatctctgca |
5843181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 5849881 - 5849923
Alignment:
| Q |
138 |
taattgatccatcttaacctacaactttttccacatctttgca |
180 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
5849881 |
taatttatccatcttaatctacaactttttccacatctctgca |
5849923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University