View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_10 (Length: 420)
Name: NF8496_low_10
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 50229440 - 50229047
Alignment:
| Q |
12 |
gagatgcataggtgagggtggggagtggatgtgcagaggtggagaaggcgtctttttacttaggaggcggcnnnnnnnacaggttaacatggttgattga |
111 |
Q |
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| T |
50229440 |
gagatgcataggtgagggtggggagtggatgtgcagaggtggagaaggcgtctttttacttaggaggcggctttttttacaggttaacatggttgattga |
50229341 |
T |
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| Q |
112 |
tgactttggttacttaatctgtctaacggatattcagtcaaagatgcttatcaaactcataagcatgtgatcaacccaacttagatannnnnnnctcatt |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50229340 |
tgactttggttacttagtctgtctaacggatattcagtcaaagatgcttatcaaactcataagcatgtgatcaacccaacttagatatttttttctcatt |
50229241 |
T |
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| Q |
212 |
tggtttggaacaaaactaaactatgaagatatcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacgtggagtgg |
311 |
Q |
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| T |
50229240 |
tggtttggaacaaaactaaactatgaagatatcattatatatggaggctcttgaacaaaaggattcctactaaggatcttcttttttcaacatggagtgg |
50229141 |
T |
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| Q |
312 |
tgcctgctacttctttgc-ttgcccgggagggggtgggaaggaggaaacaattaaggatannnnnnnaggttgtgaagtttttagtaatgtttg |
404 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50229140 |
tgcttgctacttctttgctttgcccgggagggggtgggaaggaggaaacaattaaggatatttttttaggttgtgaagtttttagtaatgtttg |
50229047 |
T |
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