View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_15 (Length: 367)
Name: NF8496_low_15
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 162985 - 163324
Alignment:
| Q |
12 |
taatactagttaactgtaaagaactgttactctatattctataca--gtgtttcgacctcaagccacatttctgcggtattgtttgcttttgagtcttgt |
109 |
Q |
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| T |
162985 |
taatactagttaactgtaaagaactgttactctatattctatacacagtgtttcgacctcaagccacatttctgcggtattgtttgcttttgagtcttgt |
163084 |
T |
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| Q |
110 |
gtgtaagacttcacggaactcatagtaagctattgtatgttactcatcagtcaagactttaggagcatgagccgttgatatttgcaaatcagtaagaaga |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
163085 |
gtgtaagacttcacggaacttatagtaagctattgtatgttactcatcagtcaagactttaggagcatgagccgttgatatttgcaaataagtaagaaga |
163184 |
T |
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| Q |
210 |
ttggtgagctacatgagctcaaatgtcattgttggaactttcgtgtaatcagctttctgttgaagatcttgcaacaannnnnnnnatttctttgatagcc |
309 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
163185 |
ttggtgagctacgtgagctcaaatgtca---ttggaactttcgtgtaatcagctttctgttgaagatcttgcaacaattttttttatttctttgatagcc |
163281 |
T |
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| Q |
310 |
atgagactagattgccaccaaagaatatgatgtaggctgatgt |
352 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
163282 |
atgagattagattgccaccaaagaatatgatgtaggctgatgt |
163324 |
T |
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