View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_16 (Length: 360)
Name: NF8496_low_16
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 39768529 - 39768373
Alignment:
| Q |
11 |
cacagactgagaaacccggccacagtatctgttcaacaagcccttcacgggctttcgtatgctgtttatgggaaacgtgatgtgagacgtctaatgtttg |
110 |
Q |
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| T |
39768529 |
cacagactgagaaacccggccacggtatctgttcaacaagcccttcacgggctttcgtatgctgtttatgggaaacgtgatgtgagacgtctaatgtttg |
39768430 |
T |
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| Q |
111 |
aggtttttgatgttgagcaaattcagcctaaaagaaatatatatgtaaagagacagt |
167 |
Q |
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| T |
39768429 |
aggtttttgatgttgagcaaattcagcctaaaagaaatatatatgtaaagagacagt |
39768373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 39768293 - 39768205
Alignment:
| Q |
257 |
ggtttaggttatcaacttaatggtcaggtaggtgaatatagaatgcaaaatacctagtacttgtatatttataacaaaaatgaggttga |
345 |
Q |
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| T |
39768293 |
ggtttaggttatcaacttaatggtcaggtaggtgaatatagaatgcaaaataccttgtacttgtatatttataacaaaaatgaggttga |
39768205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 5689433 - 5689561
Alignment:
| Q |
14 |
agactgagaaacccggccacagtatctgttcaacaagcccttcacgggctttcgtatgctgtttatgggaaacgtgatgtgagacgtctaatgtttgagg |
113 |
Q |
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| T |
5689433 |
agacggagaaacccagccacaacagctgttaatcaagctattcatggactctcgtatcttgtttatgggaaacgcgatgtgagacgtctgatgtttgagt |
5689532 |
T |
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| Q |
114 |
tttttgatgttgagcaaattcagcctaaa |
142 |
Q |
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| T |
5689533 |
attttgactttgagcagattcagcctaaa |
5689561 |
T |
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