View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8496_low_18 (Length: 317)

Name: NF8496_low_18
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8496_low_18
NF8496_low_18
[»] chr7 (1 HSPs)
chr7 (20-311)||(33401011-33401302)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 33401011 - 33401302
Alignment:
Q  20 gtctgcatatacacacacaacaatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33401011 gtctgcatatacacacacaacaatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaa 33401110  T
Q  120 gaatgtatagtttttcctcaccttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33401111 gaatgtatagtttttcctcaccttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatcc 33401210  T
Q  220 ccaagaaatcattttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33401211 ccaagaaatcattttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctct 33401302  T

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