View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8496_low_21 (Length: 312)

Name: NF8496_low_21
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8496_low_21
NF8496_low_21
[»] scaffold0283 (2 HSPs)
scaffold0283 (16-173)||(19914-20071)
scaffold0283 (49-172)||(19627-19749)
[»] chr5 (25 HSPs)
chr5 (16-173)||(42725940-42726097)
chr5 (174-308)||(3349479-3349613)
chr5 (174-307)||(43511799-43511935)
chr5 (174-307)||(17513686-17513819)
chr5 (172-307)||(10591023-10591156)
chr5 (180-307)||(42291636-42291762)
chr5 (174-301)||(5829568-5829698)
chr5 (174-307)||(29156371-29156503)
chr5 (182-301)||(20976172-20976288)
chr5 (49-172)||(42725653-42725775)
chr5 (175-301)||(7390152-7390278)
chr5 (175-221)||(13424132-13424178)
chr5 (173-239)||(37047032-37047098)
chr5 (175-307)||(931550-931682)
chr5 (177-306)||(12661489-12661619)
chr5 (253-307)||(4177381-4177435)
chr5 (253-307)||(17326026-17326080)
chr5 (177-221)||(41612990-41613034)
chr5 (174-221)||(13474898-13474945)
chr5 (174-208)||(23069474-23069508)
chr5 (254-299)||(23069413-23069458)
chr5 (168-221)||(26312254-26312307)
chr5 (253-306)||(27351531-27351584)
chr5 (253-301)||(16061085-16061133)
chr5 (173-221)||(19099062-19099110)
[»] chr2 (17 HSPs)
chr2 (173-307)||(17117394-17117528)
chr2 (175-307)||(18172694-18172825)
chr2 (178-307)||(15457682-15457812)
chr2 (174-307)||(18915799-18915936)
chr2 (176-299)||(38985461-38985584)
chr2 (176-307)||(21746983-21747114)
chr2 (174-239)||(41096289-41096354)
chr2 (173-307)||(13997494-13997628)
chr2 (174-221)||(1226017-1226064)
chr2 (172-239)||(26151495-26151562)
chr2 (166-240)||(3400108-3400182)
chr2 (174-239)||(45619225-45619290)
chr2 (174-221)||(19367174-19367221)
chr2 (174-239)||(4856242-4856307)
chr2 (188-221)||(6530929-6530962)
chr2 (254-307)||(36059735-36059788)
chr2 (174-239)||(45042640-45042705)
[»] chr6 (12 HSPs)
chr6 (173-307)||(29308216-29308350)
chr6 (180-307)||(1690473-1690600)
chr6 (179-307)||(1092796-1092924)
chr6 (174-301)||(31861172-31861301)
chr6 (174-307)||(11088752-11088883)
chr6 (182-239)||(22503993-22504050)
chr6 (170-218)||(31258317-31258365)
chr6 (173-239)||(2618602-2618668)
chr6 (182-239)||(3514606-3514663)
chr6 (254-307)||(30915191-30915244)
chr6 (177-239)||(29401388-29401450)
chr6 (254-307)||(6294435-6294490)
[»] chr8 (21 HSPs)
chr8 (179-307)||(34523709-34523836)
chr8 (178-307)||(12531740-12531871)
chr8 (174-307)||(39697695-39697821)
chr8 (178-239)||(3574849-3574910)
chr8 (173-245)||(12268372-12268444)
chr8 (174-239)||(13585555-13585620)
chr8 (172-221)||(18420353-18420402)
chr8 (253-307)||(35875080-35875134)
chr8 (174-239)||(3445782-3445847)
chr8 (63-151)||(34912339-34912427)
chr8 (174-240)||(30915036-30915100)
chr8 (268-307)||(36514999-36515038)
chr8 (186-220)||(3471867-3471901)
chr8 (253-307)||(42076290-42076344)
chr8 (179-221)||(42951549-42951591)
chr8 (175-306)||(43926076-43926206)
chr8 (180-245)||(23567033-23567097)
chr8 (254-307)||(33452940-33452993)
chr8 (175-239)||(7858334-7858398)
chr8 (171-223)||(35875166-35875218)
chr8 (181-221)||(44664360-44664400)
[»] chr7 (23 HSPs)
chr7 (175-307)||(1366190-1366322)
chr7 (172-307)||(25610247-25610380)
chr7 (174-288)||(26282282-26282398)
chr7 (176-307)||(36438104-36438234)
chr7 (175-307)||(40001462-40001594)
chr7 (174-307)||(29730839-29730970)
chr7 (174-307)||(29741977-29742108)
chr7 (173-239)||(33910314-33910380)
chr7 (174-242)||(44875909-44875977)
chr7 (253-307)||(26633544-26633598)
chr7 (174-239)||(44893777-44893842)
chr7 (47-103)||(8677774-8677830)
chr7 (184-307)||(773640-773766)
chr7 (184-307)||(32956948-32957072)
chr7 (180-222)||(4100227-4100269)
chr7 (253-307)||(42312191-42312245)
chr7 (254-307)||(3799593-3799646)
chr7 (253-306)||(28589974-28590027)
chr7 (253-306)||(30739307-30739360)
chr7 (253-307)||(40841071-40841127)
chr7 (174-239)||(42160872-42160937)
chr7 (253-306)||(44002762-44002815)
chr7 (175-239)||(6379835-6379899)
[»] chr4 (15 HSPs)
chr4 (178-307)||(55134390-55134519)
chr4 (174-301)||(34982412-34982539)
chr4 (174-221)||(51066061-51066108)
chr4 (179-306)||(21791305-21791430)
chr4 (253-290)||(9925295-9925332)
chr4 (175-239)||(41038501-41038565)
chr4 (178-221)||(29221377-29221420)
chr4 (174-221)||(53011982-53012029)
chr4 (253-307)||(24449280-24449334)
chr4 (175-239)||(11681492-11681556)
chr4 (175-239)||(11689771-11689835)
chr4 (188-239)||(23256847-23256897)
chr4 (179-306)||(32130544-32130673)
chr4 (171-223)||(24449366-24449418)
chr4 (183-239)||(27632648-27632704)
[»] chr3 (16 HSPs)
chr3 (174-307)||(48626779-48626912)
chr3 (174-307)||(43905603-43905736)
chr3 (172-239)||(28132482-28132549)
chr3 (174-307)||(51147118-51147252)
chr3 (174-239)||(6715688-6715753)
chr3 (184-307)||(1649601-1649724)
chr3 (175-285)||(40151883-40151991)
chr3 (175-306)||(25598833-25598965)
chr3 (175-307)||(7767247-7767379)
chr3 (256-306)||(21596516-21596566)
chr3 (177-307)||(46904923-46905053)
chr3 (174-239)||(13401707-13401772)
chr3 (260-307)||(27303366-27303413)
chr3 (175-221)||(21784531-21784577)
chr3 (190-239)||(27110636-27110685)
chr3 (179-239)||(46791451-46791509)
[»] chr1 (25 HSPs)
chr1 (176-307)||(12971587-12971718)
chr1 (171-239)||(51109845-51109913)
chr1 (174-299)||(25930791-25930918)
chr1 (173-239)||(6150972-6151038)
chr1 (253-307)||(50371315-50371369)
chr1 (174-307)||(26486125-26486258)
chr1 (170-218)||(20470884-20470932)
chr1 (172-307)||(37873504-37873639)
chr1 (173-240)||(42740354-42740420)
chr1 (173-239)||(17487027-17487093)
chr1 (190-239)||(14084463-14084512)
chr1 (181-226)||(30899927-30899972)
chr1 (174-239)||(50552747-50552812)
chr1 (178-222)||(28885424-28885468)
chr1 (254-306)||(39080451-39080503)
chr1 (268-307)||(13120710-13120749)
chr1 (260-307)||(15441469-15441516)
chr1 (174-221)||(20905035-20905082)
chr1 (254-308)||(9777595-9777649)
chr1 (173-239)||(18127687-18127753)
chr1 (253-307)||(27703363-27703417)
chr1 (190-306)||(30004673-30004790)
chr1 (253-302)||(24556988-24557037)
chr1 (175-239)||(259-323)
chr1 (173-221)||(48722114-48722162)
[»] scaffold0034 (1 HSPs)
scaffold0034 (184-307)||(99097-99222)
[»] scaffold0181 (1 HSPs)
scaffold0181 (188-239)||(16897-16948)
[»] scaffold0564 (1 HSPs)
scaffold0564 (174-220)||(1330-1376)
[»] scaffold0035 (1 HSPs)
scaffold0035 (253-306)||(22633-22688)


Alignment Details
Target: scaffold0283 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19914 - 20071
Alignment:
Q  16 gttaatatatttgagaattgtctgtaccaatgtagaagttagaaatattagcttttaggaagaattgattttggtactggaatcaattctaaaactagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19914 gttaatatatttgagaattgtctgtaccaatgtagaagttagaaatattagcttttaggaagaattgattttggtactggaatcaattctaaaactagaa 20013  T
Q  116 gtcagacataacaatatatggtcaaatcatgtttgaccaagtcaaatgtgattatggg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20014 gtcagacataacaatatatggtcaaatcatgtttgaccaagtcaaatgtgattatggg 20071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 19627 - 19749
Alignment:
Q  49 agaagttagaaatattagcttttaggaagaattgattttggtactggaatcaattctaaaactagaagtcagacataacaatatatggtcaaatcatgtt 148  Q
    ||||| |||||||| ||||||||| | |||| ||||||||||| ||||||||||||||||   | |||||| |||| ||||| ||||||||||  || ||    
T  19627 agaagctagaaatagtagcttttatgtagaactgattttggtaatggaatcaattctaaagtcacaagtcaaacat-acaatttatggtcaaacgatatt 19725  T
Q  149 tgaccaagtcaaatgtgattatgg 172  Q
    |||| ||  |||||||||||||||    
T  19726 tgactaacccaaatgtgattatgg 19749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 42725940 - 42726097
Alignment:
Q  16 gttaatatatttgagaattgtctgtaccaatgtagaagttagaaatattagcttttaggaagaattgattttggtactggaatcaattctaaaactagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42725940 gttaatatatttgagaattgtctgtaccaatgtagaagttagaaatattagcttttaggaagaattgattttggtactggaatcaattctaaaactagaa 42726039  T
Q  116 gtcagacataacaatatatggtcaaatcatgtttgaccaagtcaaatgtgattatggg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42726040 gtcagacataacaatatatggtcaaatcatgtttgaccaagtcaaatgtgattatggg 42726097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 308
Target Start/End: Original strand, 3349479 - 3349613
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||       |||||||||||||||||||||    
T  3349479 caggaccgtccctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacgcaatttttttgtgtagctaagctttattaaa 3349578  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaact 308  Q
    |||||||||||||||||| ||||||||| ||||||    
T  3349579 aaatcagaatcagaagagtttctaaacatgaaact 3349613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 43511935 - 43511799
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa---nnnnnnngtgtagctaagctttatt 270  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||          ||||||||||||||||||    
T  43511935 cagggtcgtccctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaattttttttttgtgtagctaagctttatt 43511836  T
Q  271 aaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||||| |||||||||||||| |||||    
T  43511835 aaaaaatcagaatcagcagagcttctaaacatgaaac 43511799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 17513686 - 17513819
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||       |||||| ||||||||||||||    
T  17513686 cagggccgtccctatgtaataggaggctcgactctctatttataataggcccccaataaaataaaaatgcaattattttgtgtagttaagctttattaaa 17513785  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||  ||||||||||||||||||||||| |||||    
T  17513786 aaaatagaatcagaagagcttctaaacatgaaac 17513819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 10591023 - 10591156
Alignment:
Q  172 ggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttatta 271  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||       |||||| ||||||||||||    
T  10591023 ggcatggccgtccctatgaaataggaggctcggctctctatttaaaatagacgc-caat-aaataaaaacgcaatttttttgtgtagttaagctttatta 10591120  T
Q  272 aaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||| || ||||||||| |||||    
T  10591121 aaaaatcagaatcagaatagtttctaaacatgaaac 10591156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 42291636 - 42291762
Alignment:
Q  180 cgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatca 279  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||       |||||| ||| |||||| |||||||||    
T  42291636 cgtccctatgaaataggaggctcggctctctatttaaa-tagccccccaataaaataaaaacgcaatttttttgtgtagttaaactttataaaaaaatca 42291734  T
Q  280 gaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||||||||||| |||||    
T  42291735 gaatcagaagagcttctaaacatgaaac 42291762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 5829698 - 5829568
Alignment:
Q  174 cagggccgtccctatgaaata--ggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngt-gtagctaagctttatt 270  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||||||| ||   ||||||||||||||||||        | |||||||| |||||||    
T  5829698 cagggccgtccttatgaaatataggaggctcggctctttatttaaaataggcctcaaataaaataaaaatgcaattttttttttgtagctaaactttatt 5829599  T
Q  271 aaaaaatcagaatcagaagagcttctaaaca 301  Q
    |||||||||||||||||||||||||||||||    
T  5829598 aaaaaatcagaatcagaagagcttctaaaca 5829568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 29156503 - 29156371
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||| | | ||  ||||||||||| |||       |||||||||| ||||||||||    
T  29156503 cagggtcgtccctataaaataggaagctcggctctctatttaaaataggctcccac-aaaataaaaatacaatttttttgtgtagctaaactttattaaa 29156405  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| |||||| |||||||||||||| |||||    
T  29156404 aaatcaaaatcagtagagcttctaaacatgaaac 29156371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 20976288 - 20976172
Alignment:
Q  182 tccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcaga 281  Q
    ||||| |||||||||||||||||||||||||||||||||| ||  |||||   |||||| ||||       ||||||||| ||||||||||||||||| |    
T  20976288 tccctgtgaaataggaggctcggctctctatttaaaataggccaccaata---taaaaacgcaatttttttgtgtagctatgctttattaaaaaatcata 20976192  T
Q  282 atcagaagagcttctaaaca 301  Q
    ||||||||||||| ||||||    
T  20976191 atcagaagagcttttaaaca 20976172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 42725653 - 42725775
Alignment:
Q  49 agaagttagaaatattagcttttaggaagaattgattttggtactggaatcaattctaaaactagaagtcagacataacaatatatggtcaaatcatgtt 148  Q
    ||||| |||||||| ||||||||| | |||| ||||||||||| ||||||||||||||||   | |||||| |||| ||||| ||||||||||  || ||    
T  42725653 agaagctagaaatagtagcttttatgtagaactgattttggtaatggaatcaattctaaagtcacaagtcaaacat-acaatttatggtcaaacgatatt 42725751  T
Q  149 tgaccaagtcaaatgtgattatgg 172  Q
    |||| ||  |||||||||||||||    
T  42725752 tgactaacccaaatgtgattatgg 42725775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 7390152 - 7390278
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaaa 273  Q
    |||||||| |||||||||||| |||||||| ||| | |||||||||| |||| ||||||||||||| | ||        |||||||||||||| ||||||    
T  7390152 agggccgttcctatgaaatagaaggctcggttctatttttaaaatagtccct-aataaaataaaaacgtaattttttgtgtgtagctaagcttcattaaa 7390250  T
Q  274 aaatcagaatcagaagagcttctaaaca 301  Q
    ||||| ||||||||||| ||| ||||||    
T  7390251 aaatcggaatcagaagaacttttaaaca 7390278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 13424178 - 13424132
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  13424178 agggccgtccctgtgaaataggaggctcggctctctttttaaaatag 13424132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 37047098 - 37047032
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||||  |||||||||||| |||||||||| |||||||||| |||| | ||||||||||    
T  37047098 gcagggccgtccccgtgaaataggaggttcggctctctttttaaaataggcccttagtaaaataaaa 37047032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 931682 - 931550
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 274  Q
    |||| ||| |||||||||||||||| |||||||||| |||||||||||||   | ||||| ||||||||||       ||||| ||||| |  |||  ||    
T  931682 agggtcgttcctatgaaataggaggttcggctctctttttaaaatagacctctagtaaaacaaaaatgcaagttttttgtgtaactaagttgcattggaa 931583  T
Q  275 aatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||| |||| | |||||||||| |||||    
T  931582 aatcagaattagaaaaacttctaaacatgaaac 931550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 12661619 - 12661489
Alignment:
Q  177 ggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttatt--aaaa 274  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||  | | | |||||| |||| | ||       ||||||||||  ||||||  ||||    
T  12661619 ggccgtccctgtgaaatgggaggctcggctctctttttaaaataggtctttagtaaaat-aaaacgtaatttttttgtgtagctaaattttattaaaaaa 12661521  T
Q  275 aatcagaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||||||||| |||||||||| ||||    
T  12661520 aatcagaatcagaagaacttctaaacatgaaa 12661489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 4177435 - 4177381
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| ||||||| |||||||||||| |||||||||| |||||||||| |||||    
T  4177435 gtgtagttaagcttcattaaaaaatcataatcagaagaacttctaaacatgaaac 4177381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 17326080 - 17326026
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||  || ||||||||||||||||||||||| ||| ||||||||||||    
T  17326080 gtgtagctaaaattcattaaaaaatcagaatcagaagaacttttaaacacgaaac 17326026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 41613034 - 41612990
Alignment:
Q  177 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||    
T  41613034 ggccgttcctatgaaataggaggctctgctctctttttaaaatag 41612990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 13474945 - 13474898
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||||    
T  13474945 cagggccgtccccgtgaaataggaggctcgactctctttttaaaatag 13474898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 23069508 - 23069474
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctct 208  Q
    |||||||||||||||||||||||||||||| ||||    
T  23069508 cagggccgtccctatgaaataggaggctcgactct 23069474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 23069458 - 23069413
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaa 299  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||||||    
T  23069458 tgtagctaagcttcattaaaaaatcaaaattagaagaacttctaaa 23069413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 26312307 - 26312254
Alignment:
Q  168 tatgggcagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||| ||||||||||  |||||||||||||||| |||||  ||||||||||    
T  26312307 tatgggccgggccgtccccgtgaaataggaggctcgactctcattttaaaatag 26312254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 27351584 - 27351531
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||| ||| ||||||||||  ||||||||||| |||||||||| ||||    
T  27351584 gtgtagctaaacttcattaaaaaattcgaatcagaagaacttctaaacatgaaa 27351531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 16061133 - 16061085
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaaca 301  Q
    |||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  16061133 gtgtagttaagcttcattaaaaaatcagaatcagaaaaaattctaaaca 16061085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 19099062 - 19099110
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||||||||||||| | ||||| ||||||||| ||||| ||||||||||    
T  19099062 gcagggccgtccctctaaaataagaggctcggttctctttttaaaatag 19099110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 17117394 - 17117528
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||       ||||||||||||||||||||    
T  17117394 gcagggccgtccctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaatgcaatttttttgtgtagctaagctttattaa 17117493  T
Q  273 aaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||||||||||||| |||||    
T  17117494 aaaatcagaatcagaagagcttctaaacatgaaac 17117528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 18172694 - 18172825
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 274  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||  || |||||||||||||| ||||       ||||||| ||||||||||||||    
T  18172694 agggccgtccctatgaaatag-aggttcggctctctatttaaaataggtccccaataaaataaaaacgcaatttttttgtgtagccaagctttattaaaa 18172792  T
Q  275 aatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||| ||||||||| |||||    
T  18172793 aatcagaatcagaagagtttctaaacatgaaac 18172825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 15457812 - 15457682
Alignment:
Q  178 gccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaaaaaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||  |||        ||||||||||||||||||||||||    
T  15457812 gccgtccctatgaaataggaggctcggctctctatttaaaataggtcttcaataaaataaaaacacaattctttttgtgtagctaagctttattaaaaaa 15457713  T
Q  277 tcagaatcagaagagcttctaaacacgaaac 307  Q
    ||| ||| |||||||||||| |||| |||||    
T  15457712 tcaaaataagaagagcttctgaacatgaaac 15457682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 18915799 - 18915936
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa----nnnnnnngtgtagctaagctttat 269  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||||||||           ||| || ||||||||||    
T  18915799 cagggccgtccctataaaataggaggctcggctctctatttaaaatagggccccaataaaataaaaatgcaatttttttttttgtgcagttaagctttat 18915898  T
Q  270 taaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||  ||||||||||||||||||||||| |||||    
T  18915899 taaaaaaatagaatcagaagagcttctaaacatgaaac 18915936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 38985461 - 38985584
Alignment:
Q  176 gggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaaaa 274  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| | ||        |||||| |||||||||||||||    
T  38985461 gggccgtccctatgaaatag-aggctcggctctctatttaaaataggcccccaataaaataaaaacgtaattttttgtgtgtagttaagctttattaaaa 38985559  T
Q  275 aatcagaatcagaagagcttctaaa 299  Q
    ||||||||||||||||| |||||||    
T  38985560 aatcagaatcagaagagtttctaaa 38985584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 21746983 - 21747114
Alignment:
Q  176 gggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||  |||       |||||  ||||||||||||||||    
T  21746983 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacacaatttttttgtgtaattaagctttattaaaaa 21747082  T
Q  276 atcagaatcagaagagcttctaaacacgaaac 307  Q
    |  ||||||| |||||||| |||||| |||||    
T  21747083 aatagaatcaaaagagcttttaaacatgaaac 21747114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 41096289 - 41096354
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||  | ||||||||||    
T  41096289 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatagacccctagtaaaataaaa 41096354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 307
Target Start/End: Complemental strand, 13997628 - 13997494
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnn-gtgtagctaagctttatta 271  Q
    ||||| |||| ||||||||||||||||||||| ||| | |||||||||| ||  || |||||| |||| ||||        |||||||||||||| ||||    
T  13997628 gcaggaccgttcctatgaaataggaggctcggttctatttttaaaataggcca-cagtaaaatcaaaacgcaattctttttgtgtagctaagcttcatta 13997530  T
Q  272 aaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||| ||| ||||||| ||||    
T  13997529 aaaaatcagaatcagaagaacttttaaacacaaaac 13997494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 1226017 - 1226064
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  1226017 cagggccgttcctatgaaataggaggctcgactctctttttaaaatag 1226064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 26151495 - 26151562
Alignment:
Q  172 ggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||||  |||||||||||||| |||||||| |||||||||| |||  | ||||||||||    
T  26151495 ggcagggccgtccccgtgaaataggaggcttggctctctttttaaaataggcccctagtaaaataaaa 26151562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 3400182 - 3400108
Alignment:
Q  166 attatgggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaa 240  Q
    |||||| ||||||||||||||| | | | |||||||||||||||   ||||||||| |||| |||||||||||||    
T  3400182 attatgagcagggccgtccctaagtattcggaggctcggctctcatgttaaaataggcccttaataaaataaaaa 3400108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 45619290 - 45619225
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||  ||||||| |||||||| |||||| |||||||||| |||| | ||||||||||    
T  45619290 cagggccgtccccgtgaaatacgaggctcgactctctttttaaaataggcccttagtaaaataaaa 45619225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 19367174 - 19367221
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||||||    
T  19367174 cagggccgtccctgtgaaataggaggcttgactctctttttaaaatag 19367221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 4856307 - 4856242
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||| ||||||  |||||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  4856307 cagggtcgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 4856242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 6530962 - 6530929
Alignment:
Q  188 tgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  6530962 tgaaataggaggctcggctctctttttaaaatag 6530929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 36059735 - 36059788
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||| ||| |||||||||||||| ||| |||| |||||||||| |||||    
T  36059735 tgtagctaaacttcattaaaaaatcagattcacaagaacttctaaacatgaaac 36059788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 45042705 - 45042640
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||| ||||||| |||  ||||||| || ||||||||||||||  | ||||||||||    
T  45042705 cagggccgtccctgtgaaatatgagaatcggctcactttttaaaatagacccatagtaaaataaaa 45042640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 29308216 - 29308350
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 272  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||       |||||| |||||||||||||    
T  29308216 gcagggccgtccccatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaatttttttgtgtagttaagctttattaa 29308315  T
Q  273 aaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||| ||||||||||||||| |||||    
T  29308316 aaaatcagaatcataagagcttctaaacatgaaac 29308350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 1690473 - 1690600
Alignment:
Q  180 cgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatca 279  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||       |||||||||| |||||| |||||||||    
T  1690473 cgtctctatgaaataggaggctcggctctctatttaaaataggcctccaataaaataaaaatgcaatttttttgtgtagctaaactttataaaaaaatca 1690572  T
Q  280 gaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||| |||||||||||| |||||    
T  1690573 gaatcagaaaagcttctaaacatgaaac 1690600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 1092796 - 1092924
Alignment:
Q  179 ccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatc 278  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||||||| ||||        ||||||||||||||||||||||||     
T  1092796 ccgtccctatgaaataggaggctcggttctctatttaaaataggcctctaataaaataaaaacgcaatttttttatgtagctaagctttattaaaaaatt 1092895  T
Q  279 agaatcagaagagcttctaaacacgaaac 307  Q
    ||||||| ||||||||||||||| |||||    
T  1092896 agaatcaaaagagcttctaaacatgaaac 1092924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 31861301 - 31861172
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaat-gcaannnnnnngtgtagctaagctttattaa 272  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||  ||||       |||||| |||||||||||||    
T  31861301 cagggccgtccctatgaaataggaggctcgactctctatttaaaataggcccccaatagaataaaaaacgcaatttttttgtgtagttaagctttattaa 31861202  T
Q  273 -aaaatcagaatcagaagagcttctaaaca 301  Q
     ||||  ||||| |||||||||||||||||    
T  31861201 aaaaaatagaattagaagagcttctaaaca 31861172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 11088883 - 11088752
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    |||||||||  ||||||||||||||||||  |||||| |||||||||| ||| |  ||||||||||||  ||       |||||||||| ||| ||||||    
T  11088883 cagggccgtttctatgaaataggaggctcaactctctttttaaaataggccccc--taaaataaaaatataaattttttgtgtagctaaacttcattaaa 11088786  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||| |||||| |||||||||| |||||    
T  11088785 aaatcagaattagaagaacttctaaacatgaaac 11088752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 22504050 - 22503993
Alignment:
Q  182 tccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  22504050 tccctatgaaataggaggctcggttctctttttaaaatagaccctcagtaaaataaaa 22503993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 31258317 - 31258365
Alignment:
Q  170 tgggcagggccgtccctatgaaataggaggctcggctctctatttaaaa 218  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  31258317 tgggcagggccgtccccgtgaaataggaggctcggctctctttttaaaa 31258365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 2618668 - 2618602
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||| | |||||||||||| |||||||||| |||||||||| |||  | ||||||||||    
T  2618668 gcagggccgtccatgtgaaataggaggttcggctctctttttaaaataggcccctagtaaaataaaa 2618602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 3514606 - 3514663
Alignment:
Q  182 tccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||| | ||||||||||    
T  3514606 tccctgtgaaataggaggctcaactctctttttaaaatagacccttagtaaaataaaa 3514663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 30915191 - 30915244
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| |||||| |||||    
T  30915191 tgtagttaagcttcattaaaaaatcagaatcagaagaacttataaacatgaaac 30915244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 29401450 - 29401388
Alignment:
Q  177 ggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||  |||||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  29401450 ggccgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 29401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 6294490 - 6294435
Alignment:
Q  254 tgtagctaagctttattaaaaaa--tcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||| |||||||||  ||||||||| |||| |||||||||| |||||    
T  6294490 tgtagctaagcttcattaaaaaaaatcagaatcaaaagaacttctaaacatgaaac 6294435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 34523709 - 34523836
Alignment:
Q  179 ccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||       |||||||||||||||||| |||||||    
T  34523709 ccgtccctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaatttttttgtgtagctaagctttatt-aaaaatc 34523807  T
Q  279 agaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||||||| |||||    
T  34523808 agaatcagaagagcttctaaacatgaaac 34523836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 12531871 - 12531740
Alignment:
Q  178 gccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgt--agctaagctttattaaaaa 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||  |||       ||||  |||||||||||||||||||    
T  12531871 gccgtccctatgaaataggaggcttggctctctatttaaaataggctcccaataaaataaaaacacaatttttttgtgtgtagctaagctttattaaaaa 12531772  T
Q  276 atcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||| ||||||||||||||||| |||||    
T  12531771 atcagaataagaagagcttctaaacatgaaac 12531740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 39697695 - 39697821
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaa 272  Q
    |||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||   ||||||||||||        |||||||||     ||||||    
T  39697695 cagggccgtccctatgaaataggaggcttgggtctctatttaaaataggcccccaat---ataaaaatgcaattttttttgtgtagcta-----tattaa 39697786  T
Q  273 aaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||| ||||||||| |||||    
T  39697787 aaaatcagaatcagaagagtttctaaacatgaaac 39697821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 3574849 - 3574910
Alignment:
Q  178 gccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||| |||||||||||||||||||| |||||||||||||||||  ||||| ||||||||||    
T  3574849 gccgttcctatgaaataggaggctcgactctctatttaaaataggtcctcagtaaaataaaa 3574910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 12268372 - 12268444
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa 245  Q
    |||||||||| |||||||||||||||||||| |||||    ||||||||||||||| |||| |||||||||||    
T  12268372 gcagggccgttcctatgaaataggaggctcgactctcatagtaaaatagaccctcagtaaattaaaaatgcaa 12268444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 13585620 - 13585555
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  13585620 cagggccgtccctgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 13585555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 18420353 - 18420402
Alignment:
Q  172 ggcagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  18420353 ggcagggtcgtccctgtgaaataggaggctcggctctctttttaaaatag 18420402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 35875134 - 35875080
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||| |||||||| ||||||||||||||||||||||| ||| |||||| |||||    
T  35875134 gtgtaactaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaac 35875080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 3445847 - 3445782
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||| |||||||| |||||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  3445847 caggaccgtccctgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 3445782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 34912427 - 34912339
Alignment:
Q  63 ttagcttttaggaagaattgattttggtactggaatcaattctaaaactagaagtcagacataacaatatatggtcaaatcatgtttga 151  Q
    |||||||||||| | |||||||||||| |||| ||||| ||| |||   ||||| || ||| |||||||||| ||||||||| ||||||    
T  34912427 ttagcttttaggtataattgattttgggactgaaatcagttccaaagtcagaagccaaacacaacaatatatagtcaaatcacgtttga 34912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 30915036 - 30915100
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaa 240  Q
    ||||||||| | ||| |||||||||| |||||||||| |||||||||||  ||| ||||||||||||    
T  30915036 cagggccgttcttataaaataggaggttcggctctctttttaaaataga--ctccataaaataaaaa 30915100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 36514999 - 36515038
Alignment:
Q  268 attaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  36514999 attaaaaaatcagaatcagaagaacttttaaacacgaaac 36515038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 3471901 - 3471867
Alignment:
Q  186 tatgaaataggaggctcggctctctatttaaaata 220  Q
    ||||||||||||||||||||||||| |||||||||    
T  3471901 tatgaaataggaggctcggctctctttttaaaata 3471867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 42076344 - 42076290
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| ||||||| |||||||||||||||||| |||| ||| |||||| |||||    
T  42076344 gtgtagataagcttcattaaaaaatcagaatcaaaagaacttttaaacatgaaac 42076290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 42951549 - 42951591
Alignment:
Q  179 ccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||||| | ||||||||||||||||||||||| ||||||||||    
T  42951549 ccgtccttgtgaaataggaggctcggctctctttttaaaatag 42951591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 43926076 - 43926206
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 274  Q
    ||||||||| |  |||||||||| |||||||||||| |||||||||| || | | |||||| |||| | ||       ||||||||||  || | |||||    
T  43926076 agggccgtctccgtgaaataggaagctcggctctctttttaaaataggcctttagtaaaat-aaaacgtaatttttttgtgtagctaaatttcactaaaa 43926174  T
Q  275 aatcagaatcagaagagcttctaaacacgaaa 306  Q
    ||||||||||||||||  ||||||||| ||||    
T  43926175 aatcagaatcagaagaagttctaaacatgaaa 43926206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 23567033 - 23567097
Alignment:
Q  180 cgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa 245  Q
    ||||| ||||||||||| |||||  ||||||||||||||||  ||| |||||||||||||| ||||    
T  23567033 cgtccttatgaaatagg-ggctcaactctctatttaaaataagcccccaataaaataaaaacgcaa 23567097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 33452993 - 33452940
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||| ||| |||||||||||| ||| |||||| |||||||||| |||||    
T  33452993 tgtagctaaacttcattaaaaaatcataattagaagaacttctaaacatgaaac 33452940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 7858398 - 7858334
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||  || ||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  7858398 agggccgtccccgtggaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 7858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 35875218 - 35875166
Alignment:
Q  171 gggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagac 223  Q
    ||||||||||||  ||||||||||||||| |||| ||| | ||||||||||||    
T  35875218 gggcagggccgttactatgaaataggaggttcggttctatttttaaaatagac 35875166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 44664360 - 44664400
Alignment:
Q  181 gtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||||| ||||||||| ||||||||||||| ||||||||||    
T  44664360 gtccctgtgaaataggtggctcggctctctttttaaaatag 44664400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 1366322 - 1366190
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| | ||       ||||||||||||||||||||||    
T  1366322 agggccgtccctatgaaatagaaggctcggctctctatttaaaatagatccccaataaaataaaaacgtaatttttttgtgtagctaagctttattaaaa 1366223  T
Q  275 aatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||||||||| |||||| |||||    
T  1366222 aatcagaatcagaagagcttgtaaacatgaaac 1366190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 307
Target Start/End: Complemental strand, 25610380 - 25610247
Alignment:
Q  172 ggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttatta 271  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||    
T  25610380 ggcagggccgtccctataaaataagaggttcgactctctatttaaaatagaccc-caataaaataaaaatgcaattttttt-tgtagctaagctttatta 25610283  T
Q  272 aaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||||||||||||| ||||| |||||    
T  25610282 aaaaatcagaatcagaagagcttccaaacatgaaac 25610247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 26282282 - 26282398
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa--nnnnnnngtgtagctaagctttatta 271  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||         |||||| ||||||||||||    
T  26282282 cagggccgtccctatgaaataggaggctcggctcactatttaaaataggcccccaataaaataaaaaagcaatttttttttgtgtagttaagctttatta 26282381  T
Q  272 aaaaatcagaatcagaa 288  Q
    |||||||||||||||||    
T  26282382 aaaaatcagaatcagaa 26282398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 36438104 - 36438234
Alignment:
Q  176 gggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaa 275  Q
    ||||||| |||| |||||||||||||||| ||| | |||||||||| || ||| ||||||||||||||||       |||||||||||||| ||||||||    
T  36438104 gggccgtacctacgaaataggaggctcggttctatttttaaaataggcc-tcagtaaaataaaaatgcaatttttgtgtgtagctaagcttcattaaaaa 36438202  T
Q  276 atcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||| ||| |||||| |||||    
T  36438203 atcagaatcagaagaacttttaaacatgaaac 36438234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 40001462 - 40001594
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 274  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||     |||||||||||||||||||       |||||| |||||||||||| ||    
T  40001462 agggccgtctctatgaaataggaggttcgactctctatttaaaataggtttccaataaaataaaaatgcaatttttttgtgtagttaagctttattagaa 40001561  T
Q  275 aatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||  ||||| ||||||||||||||||| |||||    
T  40001562 aaatagaattagaagagcttctaaacatgaaac 40001594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 29730839 - 29730970
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    ||||| ||| |||||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||  ||        |||||||||| || ||||||    
T  29730839 cagggtcgttcctatgaaataggaggctcgactctctttttaaaataggcccccagtaaaataaaaat--aatttttttttgtagctaagtttcattaaa 29730936  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| |||||||| | |||||||||| |||||    
T  29730937 aaatcacaatcagaaaaacttctaaacatgaaac 29730970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 29742108 - 29741977
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    ||||| ||| |||||||||||||||||||| |||||| |||||||||| ||| || |||||||||||  |||        |||||||||| || ||||||    
T  29742108 cagggtcgttcctatgaaataggaggctcgactctctttttaaaataggcccccagtaaaataaaaa--caatttttttttgtagctaagtttcattaaa 29742011  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| |||||||| | |||||||||| |||||    
T  29742010 aaatcacaatcagaaaaacttctaaacatgaaac 29741977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 33910380 - 33910314
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| |||  | ||||||||||    
T  33910380 gcagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 33910314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 44875909 - 44875977
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatg 242  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||  ||  | |||||||||||||    
T  44875909 cagggccgtccctatgaaataggaggctcgactctctttttaaaataggtccctactaaaataaaaatg 44875977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 26633598 - 26633544
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||| |||||    
T  26633598 gtgtagctaagcttcattaaaaaatcagaatcagaagaacgtctaaacatgaaac 26633544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 44893777 - 44893842
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||| |  |||||||||||||||| |||||| ||||||||||| ||| ||||||||||||    
T  44893777 cagggccgtctccgtgaaataggaggctcgactctctttttaaaatagatccttaataaaataaaa 44893842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 8677774 - 8677830
Alignment:
Q  47 gtagaagttagaaatattagcttttaggaagaattgattttggtactggaatcaatt 103  Q
    |||||| |||||||| |||||||||||| |||||||||||||| |||| ||||||||    
T  8677774 gtagaatttagaaattttagcttttaggtagaattgattttggaactgaaatcaatt 8677830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 773640 - 773766
Alignment:
Q  184 cctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngt---gtagctaagctttattaaaaaatcag 280  Q
    ||||||||| |||||| ||| |||||| |||||||||| ||  |||||||||||||||| ||        |   |||| ||||||| ||||||||||||     
T  773640 cctatgaaacaggaggttcgactctctttttaaaataggccgccaataaaataaaaatgtaattttttttttatgtagttaagcttcattaaaaaatcaa 773739  T
Q  281 aatcagaagagcttctaaacacgaaac 307  Q
    |||||||||| |||||||||| |||||    
T  773740 aatcagaagaacttctaaacatgaaac 773766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 32957072 - 32956948
Alignment:
Q  184 cctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaaaaaatcagaa 282  Q
    ||||| |||||||||||||  |||||| |||||||||| ||  ||||||||||||| |||||        ||| |||||||||| |||||||||||| ||    
T  32957072 cctataaaataggaggctcaactctctttttaaaataggcctccaataaaataaaactgcaattttttttgtgaagctaagcttcattaaaaaatcaaaa 32956973  T
Q  283 tcagaagagcttctaaacacgaaac 307  Q
     || |||| |||||||||| |||||    
T  32956972 ccaaaagaacttctaaacatgaaac 32956948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 4100269 - 4100227
Alignment:
Q  180 cgtccctatgaaataggaggctcggctctctatttaaaataga 222  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  4100269 cgtccctatgaaataggaggttcggctctctttttaaaataga 4100227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 42312245 - 42312191
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| ||||||| |||||||||| |||||||||||| |||||||||| |||||    
T  42312245 gtgtagttaagcttcattaaaaaattagaatcagaagaacttctaaacatgaaac 42312191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 3799593 - 3799646
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||| ||| ||| ||||||||||||||||||| |||||||||| |||||    
T  3799593 tgtagctaaacttcatttaaaaatcagaatcagaagaacttctaaacatgaaac 3799646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 28589974 - 28590027
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||| ||| |||||||||||||||||||||||  ||||||||| ||||    
T  28589974 gtgtagctaaacttcattaaaaaatcagaatcagaagaatttctaaacatgaaa 28590027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 30739360 - 30739307
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||| ||| ||||    
T  30739360 gtgtagctaaacttcattaaaaaatcagaatcagaagaacttctatacatgaaa 30739307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 40841071 - 40841127
Alignment:
Q  253 gtgtagctaagctttattaaaa--aatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||||||  ||||||||| |||||| |||||||||| |||||    
T  40841071 gtgtagctaagctttattaaaaaaaatcagaattagaagaacttctaaacatgaaac 40841127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 42160872 - 42160937
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||| |||||||||||| |  ||||||| ||||||||||| ||| | ||||||||||    
T  42160872 cagggccgtccctgtgaaataggaggttatgctctctttttaaaatagatccttagtaaaataaaa 42160937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 44002762 - 44002815
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||||||| |||||||||| | |||||||||| |||||||||| ||||    
T  44002762 gtgtagctaagcttcattaaaaaattataatcagaagaacttctaaacatgaaa 44002815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 6379835 - 6379899
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||| ||||||| ||||||| |||||||||||| || |||||||||| |||  | ||||||||||    
T  6379835 agggtcgtccctgtgaaatatgaggctcggctcactttttaaaataggcccatagtaaaataaaa 6379899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 55134519 - 55134390
Alignment:
Q  178 gccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaat 277  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  || ||||||||||||||  |||       |||||||||||||||||||||||||    
T  55134519 gccgtccctatgaaatatgaggctcggctctctatttaaaataggtccccaataaaataaaaacacaatttttttgtgtagctaagctttattaaaaaat 55134420  T
Q  278 cagaatcagaagagcttctaaacacgaaac 307  Q
    ||| |||| ||||||||||||||| |||||    
T  55134419 caggatcaaaagagcttctaaacatgaaac 55134390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 34982539 - 34982412
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaa 272  Q
    ||||| ||||||||| ||||||||||||||| |||||||| |||||||  ||||||||||||||||||||||        |||||| ||||||||||| |    
T  34982539 cagggtcgtccctataaaataggaggctcggttctctattgaaaataggtcctcaataaaataaaaatgcaattttttttgtgtagttaagctttatt-a 34982441  T
Q  273 aaaatcagaatcagaagagcttctaaaca 301  Q
    ||||||||||||||||||  |||||||||    
T  34982440 aaaatcagaatcagaagaaattctaaaca 34982412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 51066061 - 51066108
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  51066061 cagggacgtccctatgaaataggaggctcggttctctatttaaaatag 51066108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 21791305 - 21791430
Alignment:
Q  179 ccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatc 278  Q
    |||| ||||||||||| |||||||| |||||| |||||||||| | | || ||||||| ||||||||       ||| |||||| ||||||| ||||||     
T  21791305 ccgttcctatgaaatatgaggctcgactctctttttaaaataggctc-cagtaaaatagaaatgcaatttttctgtgcagctaaactttatt-aaaaatt 21791402  T
Q  279 agaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||||| |||||||||| ||||    
T  21791403 agaatcagaagaacttctaaacatgaaa 21791430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 9925332 - 9925295
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaaga 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9925332 gtgtagctaagctttattaaaaaatcagaatcagaaga 9925295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 41038565 - 41038501
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||| |||  | ||||||||||    
T  41038565 agggccgtcccggtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 41038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 29221377 - 29221420
Alignment:
Q  178 gccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||    
T  29221377 gccgtccctgtgaaataggaggctcggctctctttttaaaatag 29221420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 53012029 - 53011982
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  53012029 cagggccgttcctgtgaaataggaggctcggctctctttttaaaatag 53011982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 24449334 - 24449280
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||| |||||||| ||||||||||||||||||||||| ||| |||||| |||||    
T  24449334 gtgtaactaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaac 24449280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 11681492 - 11681556
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||  |||||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  11681492 agggccgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 11681556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 11689771 - 11689835
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||  |||||||||||||||| |||||| |||||||||| |||  | ||||||||||    
T  11689771 agggccgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 11689835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 23256897 - 23256847
Alignment:
Q  188 tgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||||||||||||| |||||||||| |||| | ||||||||||    
T  23256897 tgaaataggaggctcggctctctttttaaaataggccct-agtaaaataaaa 23256847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 32130544 - 32130673
Alignment:
Q  179 ccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttatt---aaaaa 275  Q
    |||||||| |||||||||||||||||||||   ||||||||||  ||| | |||||| |||| | ||       ||||||||||  ||||||   |||||    
T  32130544 ccgtccctgtgaaataggaggctcggctcttcttttaaaataggtccttagtaaaat-aaaacgtaatttttttgtgtagctaaattttattaaaaaaaa 32130642  T
Q  276 atcagaatcagaagagcttctaaacacgaaa 306  Q
    ||||||||||||||| |||||||||| ||||    
T  32130643 atcagaatcagaagaacttctaaacatgaaa 32130673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 24449418 - 24449366
Alignment:
Q  171 gggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagac 223  Q
    ||||||||||||  ||||||||||||||| |||| ||| | ||||||||||||    
T  24449418 gggcagggccgttactatgaaataggaggttcggttctatttttaaaatagac 24449366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 27632704 - 27632648
Alignment:
Q  183 ccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||| ||||||||||||||||||||||  |||||||||| |||  | ||||||||||    
T  27632704 ccctgtgaaataggaggctcggctctcattttaaaataggcccctagtaaaataaaa 27632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 48626779 - 48626912
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| ||||       |||||| ||| |||||| |||    
T  48626779 caggaccgtccctatgaaataggaggctcggttctctatttaaaataggccttcaataaaataaaaacgcaatttttttgtgtagttaaactttataaaa 48626878  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||| ||||||||||||||||||||||| |||||    
T  48626879 aaattagaatcagaagagcttctaaacatgaaac 48626912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 43905603 - 43905736
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||       |||| | ||||||||| ||||    
T  43905603 cagggtcgtccctatgaaataggaggctcgactctctatttaaaatagacccccaataaaataaaaacgcaatttttttgtgttgttaagctttactaaa 43905702  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||  ||||||| ||||||||||||||| |||||    
T  43905703 aaaatagaatcataagagcttctaaacatgaaac 43905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 28132482 - 28132549
Alignment:
Q  172 ggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||  | ||||||||||    
T  28132482 ggcagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 28132549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 51147252 - 51147118
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa--nnnnnnngtgtagctaagctttatta 271  Q
    ||||||||| ||||||||||||||||||||| ||| | |||||||||||||| ||||||||| |||||| ||         | |||| ||||||| ||||    
T  51147252 cagggccgttcctatgaaataggaggctcggttctatttttaaaatagaccc-caataaaattaaaatgtaatttttttttgcgtaggtaagcttcatta 51147154  T
Q  272 aaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||| |||||||||| ||  ||||||||||||    
T  51147153 aaaaatcataatcagaagaactcttaaacacgaaac 51147118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 6715753 - 6715688
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  6715753 cagggccgtccccgtgaaataggaggctcggctctctttttaaaatagatccttagtaaaataaaa 6715688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 1649601 - 1649724
Alignment:
Q  184 cctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcagaat 283  Q
    |||||||||| |||||||||||||||||||||||||||  || || |||||||||||  |||       ||||| | |||||| ||||||||||| || |    
T  1649601 cctatgaaatgggaggctcggctctctatttaaaatagttccccagtaaaataaaaacacaatttgtttgtgtaccgaagcttcattaaaaaatcggagt 1649700  T
Q  284 cagaagagcttctaaacacgaaac 307  Q
     | |||| |||||||||| |||||    
T  1649701 tataagaacttctaaacatgaaac 1649724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 40151883 - 40151991
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 274  Q
    |||| ||| |||||||||||||||||||| |||||| |||||||||||  |||  ||||||||||||  ||       |||||| ||||||| |||||||    
T  40151883 agggtcgttcctatgaaataggaggctcgactctctttttaaaataga--ctccctaaaataaaaatataattgttttgtgtagttaagcttcattaaaa 40151980  T
Q  275 aatcagaatca 285  Q
    |||||||||||    
T  40151981 aatcagaatca 40151991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 25598833 - 25598965
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttatt--aa 272  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||  | | | |||||| |||| | ||       |||||||||| ||| |||  ||    
T  25598833 agggccgttcctataaaataggaggctcggctctctttttaaaataggtctttagtaaaat-aaaacgtaatttttttgtgtagctaaacttcattaaaa 25598931  T
Q  273 aaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    |||||||||||||||||| |||||||||| ||||    
T  25598932 aaaatcagaatcagaagaacttctaaacatgaaa 25598965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 7767379 - 7767247
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaa 273  Q
    |||||||| ||||||||||||||||||||| ||| | |||||||||| |||  | ||| ||||||| |||         |||||||||||||| ||||||    
T  7767379 agggccgttcctatgaaataggaggctcggttctatttttaaaataggccca-agtaagataaaaacgcatttttttgtgtgtagctaagcttcattaaa 7767281  T
Q  274 aaatcagaatcagaagagcttctaaacacgaaac 307  Q
    || |||||||||||||| ||| |||||| |||||    
T  7767280 aagtcagaatcagaagaacttttaaacatgaaac 7767247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 21596566 - 21596516
Alignment:
Q  256 tagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||| ||||    
T  21596566 tagctaagcttcattaaaaaatcagaatcaaaagaacttctaaacatgaaa 21596516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 307
Target Start/End: Complemental strand, 46905053 - 46904923
Alignment:
Q  177 ggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaaaa 275  Q
    |||||| ||||||||||||||||||||| ||| | ||||||||||   | || |||||||||||| |||        ||||||| |||||| ||||||||    
T  46905053 ggccgttcctatgaaataggaggctcggttctatttttaaaataggttc-cagtaaaataaaaattcaattttttatgtgtagcgaagcttcattaaaaa 46904955  T
Q  276 atcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||| |||||| ||| |||||| |||||    
T  46904954 atcagaataagaagaacttttaaacatgaaac 46904923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 13401772 - 13401707
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||| | |||||||||||||| |||||| ||||||||||  ||| | ||||||||||    
T  13401772 cagggccgtccctgtaaaataggaggctcgactctctttttaaaataggtccttagtaaaataaaa 13401707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 27303413 - 27303366
Alignment:
Q  260 taagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||| ||||||||||||||||||||||| ||| |||||| |||||    
T  27303413 taagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaac 27303366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 21784531 - 21784577
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||||||||||| |||||||||||| ||| |||||| ||||||||||    
T  21784531 agggccgtccctctgaaataggaggttcgactctctttttaaaatag 21784577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 27110636 - 27110685
Alignment:
Q  190 aaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||||| |||||| ||||||||||||||  | ||||||||||    
T  27110636 aaataggaggctcgactctctttttaaaatagacccgtagtaaaataaaa 27110685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 46791451 - 46791509
Alignment:
Q  179 ccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||| ||||||||||||||||||||||  |||||||||| |||  | ||||||||||    
T  46791451 ccgtccctgtgaaataggaggctcggctctc--tttaaaataggcccctagtaaaataaaa 46791509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 12971718 - 12971587
Alignment:
Q  176 gggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaa 275  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||       || ||||||| ||||||||||||    
T  12971718 gggctgtccctataaaataggaggctcggctctctatttaaaataaacccctaataaaataaaaacgcaatttttttgtatagctaaactttattaaaaa 12971619  T
Q  276 atcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||   ||||||| |||| |||||    
T  12971618 atcagaatcagtttagcttcttaacatgaaac 12971587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 51109845 - 51109913
Alignment:
Q  171 gggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||  | ||||||||||    
T  51109845 gggcagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 51109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 299
Target Start/End: Complemental strand, 25930918 - 25930791
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 273  Q
    ||||| ||||||| | |||||||| ||||| |||||| || ||||||| |||  ||||||||||||| | ||       |||||||||| ||| ||||||    
T  25930918 cagggtcgtccctgtaaaataggaagctcgactctcttttgaaaataggcccctaataaaataaaaacgtaatttttttgtgtagctaaacttcattaaa 25930819  T
Q  274 aaa--tcagaatcagaagagcttctaaa 299  Q
    |||  |||||||||||||||||||||||    
T  25930818 aaaaatcagaatcagaagagcttctaaa 25930791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 6151038 - 6150972
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||  |||| | ||||||||||    
T  6151038 gcagggccgtccctgtgaaataggaggctcgactctctttttaaaataagcccttagtaaaataaaa 6150972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 50371369 - 50371315
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||| |||||    
T  50371369 gtgtagctaagcttcattaaaaaatcagaatcataagaacttctaaacatgaaac 50371315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 26486125 - 26486258
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaa 272  Q
    ||||||||| ||||| ||||||||||||||| ||| | || ||||||| |||  | |||||||||||||||         |||||||||||||| ||| |    
T  26486125 cagggccgttcctataaaataggaggctcggttctattttcaaaataggcccg-agtaaaataaaaatgcatttttttgtgtgtagctaagcttcattta 26486223  T
Q  273 aaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||||||||||||||| ||| |||||| |||||    
T  26486224 aaaatcagaatcagaagaacttttaaacatgaaac 26486258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 20470932 - 20470884
Alignment:
Q  170 tgggcagggccgtccctatgaaataggaggctcggctctctatttaaaa 218  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  20470932 tgggcagggccgtccccgtgaaataggaggctcggctctctttttaaaa 20470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 37873504 - 37873639
Alignment:
Q  172 ggcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttatt 270  Q
    |||||||||||  |||||||||||||||||||  ||| | |||||||||| ||| || ||||||||||||| ||        |||||| ||||||| |||    
T  37873504 ggcagggccgtttctatgaaataggaggctcgattctatttttaaaataggccc-cagtaaaataaaaatgtaattttttgtgtgtagttaagcttcatt 37873602  T
Q  271 aaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||| ||||||| |||| ||| |||||| |||||    
T  37873603 aaaaaattagaatcataagaacttttaaacatgaaac 37873639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 42740420 - 42740354
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaa 240  Q
    |||||||||| ||||||||||||||||||||| ||| | |||||||||| ||| || |||||||||||    
T  42740420 gcagggccgttcctatgaaataggaggctcggttctatttttaaaataggccc-cagtaaaataaaaa 42740354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 17487027 - 17487093
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||| ||||||  |||||||||||||||| |||||| |||||||||| |||| | ||||||||||    
T  17487027 gcagggtcgtccccgtgaaataggaggctcgactctctttttaaaataggcccttagtaaaataaaa 17487093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 14084463 - 14084512
Alignment:
Q  190 aaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  14084463 aaataggaggctcggctctctttttaaaatagacctataataaaataaaa 14084512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 30899972 - 30899927
Alignment:
Q  181 gtccctatgaaataggaggctcggctctctatttaaaatagaccct 226  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||    
T  30899972 gtccctgtgaaataggaggttcggctctctttttaaaatagaccct 30899927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 50552812 - 50552747
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||| |||||| | ||||||||||||| ||||||| ||||||||| ||||| | ||||||||||    
T  50552812 cagggctgtccctgtaaaataggaggctcagctctctttttaaaataaacccttagtaaaataaaa 50552747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 28885424 - 28885468
Alignment:
Q  178 gccgtccctatgaaataggaggctcggctctctatttaaaataga 222  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||    
T  28885424 gccgtccatatgaaataggaggctcgactctctttttaaaataga 28885468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 39080451 - 39080503
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaa 306  Q
    ||||||||||||| ||| |||||||||||||| |||| |||||||||| ||||    
T  39080451 tgtagctaagcttcattgaaaaatcagaatcataagaacttctaaacatgaaa 39080503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 13120710 - 13120749
Alignment:
Q  268 attaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  13120710 attaaaaaatcagaatcagaagaacttttaaacacgaaac 13120749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 15441516 - 15441469
Alignment:
Q  260 taagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    ||||||| |||||||||||| |||||||||| |||||||||| |||||    
T  15441516 taagcttcattaaaaaatcaaaatcagaagaacttctaaacatgaaac 15441469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 20905035 - 20905082
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    ||||| ||||||| |||||||||||||||| |||||| ||||||||||    
T  20905035 cagggtcgtccctgtgaaataggaggctcgactctctttttaaaatag 20905082  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 9777649 - 9777595
Alignment:
Q  254 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaact 308  Q
    ||||||||| ||| |||||||||||||||| |||| | |||||||||| ||||||    
T  9777649 tgtagctaaacttcattaaaaaatcagaattagaataacttctaaacatgaaact 9777595  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 18127687 - 18127753
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    |||||||||||||| |||||||||||| |||| ||||| || |||||||  ||| | ||||||||||    
T  18127687 gcagggccgtccctgtgaaataggaggttcggttctcttttcaaaataggtccttagtaaaataaaa 18127753  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 27703363 - 27703417
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacacgaaac 307  Q
    |||||| |||||||| ||||||||||||||||| || | |||||||||| |||||    
T  27703363 gtgtagttaagctttgttaaaaaatcagaatcataataacttctaaacatgaaac 27703417  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 30004673 - 30004790
Alignment:
Q  190 aaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa--aaatcagaatcaga 287  Q
    ||||||||||||||||||||| |||||||||| |||  | |||||| |||| | ||       |||||||||| ||| ||| ||  ||||||||||||||    
T  30004673 aaataggaggctcggctctctttttaaaataggcccatagtaaaat-aaaacgtaatttttttgtgtagctaaacttcattgaattaaatcagaatcaga 30004771  T
Q  288 agagcttctaaacacgaaa 306  Q
    ||| |||||||||| ||||    
T  30004772 agaacttctaaacatgaaa 30004790  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 24557037 - 24556988
Alignment:
Q  253 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacac 302  Q
    |||||||||||||| ||| |||||| |||||||||||| ||| |||||||    
T  24557037 gtgtagctaagcttcattgaaaaattagaatcagaagaacttttaaacac 24556988  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 323 - 259
Alignment:
Q  175 agggccgtccctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||| || ||| ||||||||||||||||| ||||| |||||||||| | | || ||||||||||    
T  323 agggctgttcctgtgaaataggaggctcggttctctttttaaaataggctcccagtaaaataaaa 259  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 48722114 - 48722162
Alignment:
Q  173 gcagggccgtccctatgaaataggaggctcggctctctatttaaaatag 221  Q
    |||| ||||||| | |||||||||||||||| |||||| ||||||||||    
T  48722114 gcagagccgtccgtgtgaaataggaggctcgactctctttttaaaatag 48722162  T

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Target: scaffold0034 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 99222 - 99097
Alignment:
Q  184 cctatgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaaatgcaa--nnnnnnngtgtagctaagctttattaaaaaatcaga 281  Q
    |||||||||||||||||||   ||||| |||||||||| |||||| ||||||||||||||||          ||||||||  ||| ||||||||||||||    
T  99222 cctatgaaataggaggctcaaatctctttttaaaataggccctcagtaaaataaaaatgcaatttttttttttgtagctagccttcattaaaaaatcaga 99123  T
Q  282 atcagaagagcttctaaacacgaaac 307  Q
    ||||||||| |||||||||| |||||    
T  99122 atcagaagaacttctaaacatgaaac 99097  T

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Target: scaffold0181 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 16897 - 16948
Alignment:
Q  188 tgaaataggaggctcggctctctatttaaaatagaccctcaataaaataaaa 239  Q
    ||||||||||||||||||||||| |||||||||| |||  ||||||||||||    
T  16897 tgaaataggaggctcggctctctttttaaaataggcccctaataaaataaaa 16948  T

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Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 1376 - 1330
Alignment:
Q  174 cagggccgtccctatgaaataggaggctcggctctctatttaaaata 220  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||    
T  1376 cagggccgtccccgtgaaataggaggctcggctctctttttaaaata 1330  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 22633 - 22688
Alignment:
Q  253 gtgtagctaagctttattaaaa--aatcagaatcagaagagcttctaaacacgaaa 306  Q
    ||||||||||  ||||||||||  |||||||||||||||| |||||||||| ||||    
T  22633 gtgtagctaaattttattaaaaaaaatcagaatcagaagaacttctaaacatgaaa 22688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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