View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_24 (Length: 298)
Name: NF8496_low_24
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 39930349 - 39930595
Alignment:
| Q |
17 |
aaataactccagttaatgcagctcctgaagcaacatagaaagtgaagaagtaccagttgaaaaatgttccttgatgttctggtttgtcaaattgatttgc |
116 |
Q |
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| T |
39930349 |
aaataattccagttaatgcagctcctgaagcaacatagaaagtgaagaagtaccagttgaaaaatgttccttgatgttctggtttgtcaaattgatttgc |
39930448 |
T |
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| Q |
117 |
acctaatgatgctgctgtgtaacgcgaaccaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttg |
216 |
Q |
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| T |
39930449 |
acctaatgatgctgctgtgaaacgcgaaccaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttg |
39930548 |
T |
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| Q |
217 |
catgtgatggatgaatcattgctgcatggatgaggctttagtgaatt |
263 |
Q |
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| T |
39930549 |
catgtagtagatgaatctttgctgcatggatgaggctttaatgaatt |
39930595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 39692977 - 39692713
Alignment:
| Q |
17 |
aaataactccagttaatgcagctcctgaagcaacatagaaagtgaagaagtaccagttgaaaaatgttccttgatgttctggtttgtcaaattgatttgc |
116 |
Q |
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| T |
39692977 |
aaataattccagttaatgcagctcctgaagcaacatagaaagcgaaaaagaaccagttgaaaaatattccctgatgttctggtttgttaaattgattggc |
39692878 |
T |
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| Q |
117 |
acctaatgatgctgctgtgtaacgcgaaccaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttg |
216 |
Q |
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| T |
39692877 |
tcctagtgatgctgctgtgtaacgtgaaccaccaaaaccaattgatattaacactatgcttatgtataaaactgtatattggattcctgttggtggtttg |
39692778 |
T |
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| Q |
217 |
catgtgatggatgaatcattgctgcatggatgaggctttagtgaattaatagttgccgtcaagaa |
281 |
Q |
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| T |
39692777 |
catgtgattgatgaatcattgctacatggatgaggctttagtgaattaatagttgccgtcaagaa |
39692713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 39702950 - 39702695
Alignment:
| Q |
17 |
aaataactccagttaatgcagctcctgaagcaacatagaaagtgaagaagtaccagttgaaaaatgttccttgatgttctggtttgtcaaattgatttgc |
116 |
Q |
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| T |
39702950 |
aaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaaccagttgaaaaatgttccttgatcttcaagtttgtcaaactgatttgc |
39702851 |
T |
|
| Q |
117 |
acctaatgatgctgctgtgtaacgcgaaccaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttg |
216 |
Q |
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| T |
39702850 |
acctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatg |
39702751 |
T |
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| Q |
217 |
catgtgatggatgaatcattgctgcatggatgaggctttagtgaattaatagttgc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| || ||||| |
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| T |
39702750 |
catgtgatggatgaatcattgctgcatggatgaggctttaatgaattgattgttgc |
39702695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 39935021 - 39935130
Alignment:
| Q |
147 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgctgcatgga |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
39935021 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
39935120 |
T |
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| Q |
247 |
tgaggcttta |
256 |
Q |
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|||||||||| |
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| T |
39935121 |
tgaggcttta |
39935130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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