View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_28 (Length: 275)
Name: NF8496_low_28
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 46899610 - 46899359
Alignment:
| Q |
16 |
aattaaaccctaatcaatgaaatttatcacccataacgatcaacattacgatcttggtaa---ggcttaggcaatgaaacagggaaccctaatcctgaac |
112 |
Q |
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| T |
46899610 |
aattaaaccctaatcaatgaaatttatcacccataacgatcaacattacgatcttggtaattaggcttaggcaatgaaacagggaaccctaatcctgaac |
46899511 |
T |
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| Q |
113 |
ctgcaactgtcctgttactgttggctcctgaagcacgttcctgcagtgacttaagttgtgtcttgagaaacttaacataatgaatagcttcatccaacat |
212 |
Q |
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| T |
46899510 |
cagcaactgtcctgttactgttggctcctgaagcacgttcctgcagtgacttaagttgtgtcttgagaaacttaacataatgaatagcttcatccaacat |
46899411 |
T |
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| Q |
213 |
tgatgcagtatccattttagttccacctggtaccattctttgcagtattctt |
264 |
Q |
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| T |
46899410 |
tgatgcagtatccattttagttccacctggtaccattctttgcagtattctt |
46899359 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 25645177 - 25645243
Alignment:
| Q |
173 |
tcttgagaaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacc |
239 |
Q |
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| T |
25645177 |
tcttaagaaacttaacataatgaatagcttcctccaacatagaaacagtatctaatttacttccacc |
25645243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 39073623 - 39073564
Alignment:
| Q |
180 |
aaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacc |
239 |
Q |
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| T |
39073623 |
aaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccacc |
39073564 |
T |
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