View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_31 (Length: 250)
Name: NF8496_low_31
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 42726411 - 42726165
Alignment:
| Q |
1 |
ctaccatgctctcctgtgacccgtgtgtttgtttatctgcacctgcatgcataataggtgcacaactgtagcagcaggctaacattaaaaggacagaaaa |
100 |
Q |
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| T |
42726411 |
ctaccatgctctcctgtgacccgtgtgtttgtttatctgcacctgcatgcataataggtgcacaactgtagcagcaggctaacattaaaaggacagaaaa |
42726312 |
T |
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| Q |
101 |
cnnnnnnnn--caagggacagaaaatatccaatcctaatacattatagactgcaccataagcacggctcatacggtaaaaaagttgtgggaatattttat |
198 |
Q |
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| T |
42726311 |
caaaaaaaaaacaagggacagaaaatatccaatcctaatacagtatagactgcaccataagcacggctcatacggtaaaaaagttgtgggaatattttat |
42726212 |
T |
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| Q |
199 |
gtgctagtgtatgggttcaaagctgcgataccacacttcttctcact |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42726211 |
gtgctagtgtatgggttcaaagctgcgataccacacttctcctcact |
42726165 |
T |
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