View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_33 (Length: 250)
Name: NF8496_low_33
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_33 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 25516505 - 25516294
Alignment:
| Q |
39 |
tcttacaccggtgatgactgaacaacacaatatggtggggagacggtgcaactcaagcacgacagtagtggatgatgacactgatgtggtcggctatggt |
138 |
Q |
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| T |
25516505 |
tcttacaccggtgatgactgaacgacacaatatggtggggagacggtggaactcaagcacgacagtagtggatgatgacactgatgtggtcggctatggt |
25516406 |
T |
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| Q |
139 |
tgcatggactctcctctccctccctctcatttcttggcttttaaaattgatacataatgaattgtagtttcattgtaaaatattttcttttttaattcaa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25516405 |
tgcatggactctcctctccctccctctcatttcttggcttttaaaattgatacataatgaattgtagtttcattgtaaaatattttcttttttaattcaa |
25516306 |
T |
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| Q |
239 |
gtttgtaacact |
250 |
Q |
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||| |||||||| |
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| T |
25516305 |
gttcgtaacact |
25516294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 26064755 - 26064571
Alignment:
| Q |
67 |
aatatggtggggagacggtgcaactcaagcac-gacagtagtggatgatgacactgatgtggtcggctatggttgcatggactctcctctccctccctct |
165 |
Q |
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|||||| ||| || || ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| |
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| T |
26064755 |
aatatgatggagacacagtggaactcaagcaccgacagtagtggatgatgacactgatgtggtcgcctatggttgcagggactctcctctccctccatct |
26064656 |
T |
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| Q |
166 |
catttcttggcttttaaaattgatacataatgaattgtagtttcattgtaaaatattttcttttttaattcaagtttgtaacact |
250 |
Q |
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| T |
26064655 |
cattacttggtttgtaaaattgatacataatgaattgtagtttgattgtaaaatattttcttttttgattcaagtttgtaacact |
26064571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 26084724 - 26084540
Alignment:
| Q |
67 |
aatatggtggggagacggtgcaactcaagcac-gacagtagtggatgatgacactgatgtggtcggctatggttgcatggactctcctctccctccctct |
165 |
Q |
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| T |
26084724 |
aatatgatggagacacagtggaactcaagcaccgacagtagtggatgatgacactgatgtggtcgcctatggttgcagggactctcctctccctccatct |
26084625 |
T |
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| Q |
166 |
catttcttggcttttaaaattgatacataatgaattgtagtttcattgtaaaatattttcttttttaattcaagtttgtaacact |
250 |
Q |
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| T |
26084624 |
cattacttggtttgtaaaattgatacataatgaattgtagtttgattgtaaaatattttcttttttgattcaagtttgtaacact |
26084540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 26049194 - 26049084
Alignment:
| Q |
51 |
gatgactgaacaacacaatatggtggggagacggtgcaactcaagcacg--acagtagtggatgatgacactgatgtggtcggctatggttgcatggact |
148 |
Q |
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| T |
26049194 |
gatgactgaacgacacaatatgatggagagacggtggaactcaagcacgcgacagtagtggatgatgacactgatgtggtcgcctatggttgcagggact |
26049095 |
T |
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| Q |
149 |
ctcctctccct |
159 |
Q |
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||||||||||| |
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| T |
26049094 |
ctcctctccct |
26049084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 26070363 - 26070253
Alignment:
| Q |
51 |
gatgactgaacaacacaatatggtggggagacggtgcaactcaagcacg--acagtagtggatgatgacactgatgtggtcggctatggttgcatggact |
148 |
Q |
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||||||||||| |||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
26070363 |
gatgactgaacgacacaatatgatggagagacggtggaactcaagcacgcgacagtagtggatgatgacactgatgtggtcgcctatggttgcagggact |
26070264 |
T |
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| Q |
149 |
ctcctctccct |
159 |
Q |
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| T |
26070263 |
ctcctctccct |
26070253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 25516675 - 25516645
Alignment:
| Q |
9 |
gattatacttttgccaactctcatgttttgt |
39 |
Q |
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| T |
25516675 |
gattatacttttgccaactctcatgttttgt |
25516645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 54293238 - 54293303
Alignment:
| Q |
180 |
taaaattgatacataatgaattgtagtttcattgtaaaatattttcttttttaattcaagtttgtaac |
247 |
Q |
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| T |
54293238 |
taaaattgatacatactgaaccgtattttcattgtaaaata--ttctttttttattcaagtttgtaac |
54293303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 42448206 - 42448272
Alignment:
| Q |
180 |
taaaattgatacataatgaattgtagtttcattgtaaaatattttcttttttaattcaagtttgtaac |
247 |
Q |
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| T |
42448206 |
taaaattgataaataatgaattgttgtttcagtgtgaaatgttttctttttt-attctagtttgtaac |
42448272 |
T |
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