View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_34 (Length: 248)
Name: NF8496_low_34
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_34 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 20082775 - 20083007
Alignment:
| Q |
16 |
ataggaagaaagatgcattttcaatttttctttattactgttctgtgttgtggaattaaagtggaaggtaaatctacaccattaatttgatcagatagct |
115 |
Q |
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| T |
20082775 |
ataggaagaaagacgcattttcagtttttctttattactgttctgtgttgtggaattaaagtggaaggtaaatctaaacctttaatttgatcagatagct |
20082874 |
T |
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| Q |
116 |
atgcttttttactacagtgaatcacaagctatgttgtttcttcttagataccaatcttcttgttgagcacaagctggaagaacactcaaaatctgaactt |
215 |
Q |
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| T |
20082875 |
atgcttttttactacagtgaatcacaagctatgttgtttcttcttagataccaatcttctagttgagcacaagctggaaaaacactcaaaatctgaactt |
20082974 |
T |
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| Q |
216 |
cattgaaagtttccattgaatcttcttcatttc |
248 |
Q |
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| T |
20082975 |
cattgaaagtttccattgaatcttctgcatttc |
20083007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 18978636 - 18978729
Alignment:
| Q |
144 |
ctatgttgtttcttcttagataccaatcttcttgttgagcacaagctggaagaacactcaaaatctgaacttcattgaaagtttccattgaatc |
237 |
Q |
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| T |
18978636 |
ctatgttgttttttcttagataccaatctcctagttgagcacaagcttgaagaacactcaaaaactgaatttcattgaaagtttccaatgaatc |
18978729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 18985060 - 18985151
Alignment:
| Q |
144 |
ctatgttgtttcttcttagataccaatcttcttgttgagcacaagctg-----gaagaacactcaaaatctgaacttcattgaaagtttcca |
230 |
Q |
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| T |
18985060 |
ctatgttgttttttcttagataccaatctcctagttgagcacaagctgtggaagaagaacactaaaaaactaaatttcattgaaagtttcca |
18985151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 8503 - 8412
Alignment:
| Q |
144 |
ctatgttgtttcttcttagataccaatcttcttgttgagcacaagctg-----gaagaacactcaaaatctgaacttcattgaaagtttcca |
230 |
Q |
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| T |
8503 |
ctatgttgttttttcttagataccaatctcctagttgagcacaagctgtggaagaagaacactcaaaaactaaatttcattgaaagtttcca |
8412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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