View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_36 (Length: 238)
Name: NF8496_low_36
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 8479267 - 8479401
Alignment:
| Q |
86 |
attaagcttaaatttcatgtttaatacaccaaaatatataataaaataaatttgtttgctatcctatacttacttgccttttgtaattcttattctgagt |
185 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479267 |
attaggcttaaatctcatgtttaatacaccaaaatatataataaaataaatttgtttgctatcctatacttacttgccttttgtaattcttattctgagt |
8479366 |
T |
|
| Q |
186 |
agaacacttaaaaactatcctgattaaaaaatcat |
220 |
Q |
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| T |
8479367 |
agaccacttaaaaactatcctgattaaaaaatcat |
8479401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 8479221 - 8479267
Alignment:
| Q |
13 |
atgaacgataaactcttactcataatccatttaaagagtaagacaga |
59 |
Q |
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| T |
8479221 |
atgaatgataaactcttactcataatccatttaaagagtaagtcaga |
8479267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 29860854 - 29860912
Alignment:
| Q |
60 |
gagacatgatataatatattaatcatattaagcttaaatttcatgtttaatacaccaaa |
118 |
Q |
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| T |
29860854 |
gagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaa |
29860912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 37485584 - 37485663
Alignment:
| Q |
57 |
agagagacatgatataatatattaatcatattaagcttaaatttcatgtttaatacacc-aaaatatataataaaataaa |
135 |
Q |
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| T |
37485584 |
agagagacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaataaa |
37485663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 21748570 - 21748497
Alignment:
| Q |
60 |
gagacatgatataatatattaatcatattaagcttaaatttcatgtttaatacaccaaaat-atataataaaat |
132 |
Q |
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| T |
21748570 |
gagacatgatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaat |
21748497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 3480906 - 3480853
Alignment:
| Q |
57 |
agagagacatgatataatatattaatcatattaagcttaaatttcatgtttaat |
110 |
Q |
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| T |
3480906 |
agagagatatgatatgatatattaatcatatcatgcataaatctcatgtttaat |
3480853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 41410844 - 41410815
Alignment:
| Q |
59 |
agagacatgatataatatattaatcatatt |
88 |
Q |
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| T |
41410844 |
agagacatgatataatatattaatcatatt |
41410815 |
T |
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