View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8496_low_4 (Length: 517)
Name: NF8496_low_4
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 41469538 - 41469383
Alignment:
| Q |
1 |
ataacaatttacttttcagtattagcatacccttgataaactgttgaagcatctcctctttttgatccatcactttctttagaaacacattagcctcgct |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41469538 |
ataacaatttacttta-agtattaacatacccttgataaactgttgaagcatctcctctttttgatccatcactttctttagaaacacattagcctcgct |
41469440 |
T |
|
| Q |
101 |
atatttgcttattgt---atgttccaattccatggtcttcagctttaaggtatgagc |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41469439 |
atatttgcttattgtatgatgttccaattccatggtcttcagctttaaggtatgagc |
41469383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 41476523 - 41476420
Alignment:
| Q |
47 |
aagcatctcctctttttgatccatcactttctttagaaacacattagcctcgctatatttgcttattgtatgttccaattccatggtcttcagctttaag |
146 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
41476523 |
aagcatcttctctttttgatccatcactttccttaagaacgcattagcctcatcatatttgcttgctgtatgttccaattcatcggtcttctgctttaag |
41476424 |
T |
|
| Q |
147 |
gtat |
150 |
Q |
| |
|
|||| |
|
|
| T |
41476423 |
gtat |
41476420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 40750788 - 40750680
Alignment:
| Q |
42 |
tgttgaagcatctcctctttttgatccatcactttctttagaaacacattagcctcgctatatttgcttattgtatgttccaattccatggtcttcagct |
141 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| ||||| |||| ||||||| ||||| ||||||||| ||| |||||||||||| ||||||| ||| |
|
|
| T |
40750788 |
tgttcaagcatcatctctttttgttccattgctttccttagggacacattcgcctcatcgtatttgcttgctgtctgttccaattcctcggtcttccgct |
40750689 |
T |
|
| Q |
142 |
ttaaggtat |
150 |
Q |
| |
|
||||||||| |
|
|
| T |
40750688 |
ttaaggtat |
40750680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 52471692 - 52471573
Alignment:
| Q |
26 |
catacccttgataaactgttgaagcatctcctctttttgatccatcactttctttagaaacacattagcctcgctatatttgcttattgtatgttccaat |
125 |
Q |
| |
|
||||||||| |||| | || |||||||||||||| ||||||||||| |||| |||| |||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
52471692 |
catacccttattaaaattttcaagcatctcctcttcttgatccatcagtttcattaggaacacattagcctcatcatatttgcttgttgtctgttccaat |
52471593 |
T |
|
| Q |
126 |
tccatggtcttcagctttaa |
145 |
Q |
| |
|
| |||| |||||| |||||| |
|
|
| T |
52471592 |
ttcatgttcttcaactttaa |
52471573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 16409211 - 16409335
Alignment:
| Q |
26 |
catacccttgataaactgttgaagcatctcctctttttgatccatcactttctttagaaacacattagcctcgctatatttgcttattgtatgttccaat |
125 |
Q |
| |
|
||||||||| |||| |||| |||||||| ||||||||||||||| ||||| |||| ||||||| |||| ||| |||||| ||| ||||||| | |
|
|
| T |
16409211 |
catacccttattaaaatgttcaagcatcttttctttttgatccatcgctttccttagggacacattcacctcatcatacttgcttgctgtctgttccagt |
16409310 |
T |
|
| Q |
126 |
tccatggtcttcagctttaaggtat |
150 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
16409311 |
tcctcggtcttcagctttaaggtat |
16409335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 16418447 - 16418479
Alignment:
| Q |
117 |
tgttccaattccatggtcttcagctttaaggta |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16418447 |
tgttccaattccatggtcttcagctttaaggta |
16418479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 3678358 - 3678326
Alignment:
| Q |
371 |
taaaaattaatttaacaactaattgctaacatt |
403 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
3678358 |
taaatattaatttaacaactaattgctaacatt |
3678326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University