View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_40 (Length: 227)
Name: NF8496_low_40
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 46477398 - 46477594
Alignment:
| Q |
18 |
gctttgcactaactaaaattctgtattccatcgtcattattctctgaatcatgtttttatccggcctataatctatttcaaataaatggggaaagagccg |
117 |
Q |
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| T |
46477398 |
gctttgcactaattaaaattctgtattccatcgtcattattctctgaatcatgtttttatccagcctatcatctatttcaaataaatggggaaagagccg |
46477497 |
T |
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| Q |
118 |
taaggaaaacgagaaatactattgtacttaaattgaccacccaaaaatcaaaatcccacgcaacagacaaattaagaggcatattgtcgcaacacca |
214 |
Q |
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| T |
46477498 |
taaggaaaacgagaaatactattgtacttaaattgaccacccaaaaatcaaaatcccacgcaacagacaaattaagaggcatattgtcgcaacacca |
46477594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 46494160 - 46494203
Alignment:
| Q |
83 |
ctataatctatttcaaataaatggggaaagagccgtaaggaaaa |
126 |
Q |
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| T |
46494160 |
ctatcatctatttcaaataaatggggaaagagccgtaaggaaaa |
46494203 |
T |
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