View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8496_low_41 (Length: 216)

Name: NF8496_low_41
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8496_low_41
NF8496_low_41
[»] chr6 (6 HSPs)
chr6 (25-201)||(25515855-25516029)
chr6 (75-134)||(26064363-26064422)
chr6 (75-134)||(26084332-26084391)
chr6 (125-193)||(25455355-25455423)
chr6 (75-114)||(25516086-25516125)
chr6 (26-62)||(24062393-24062429)
[»] scaffold0092 (1 HSPs)
scaffold0092 (25-62)||(44581-44618)
[»] chr7 (7 HSPs)
chr7 (25-62)||(45633696-45633733)
chr7 (26-62)||(15037404-15037440)
chr7 (25-62)||(4675949-4675986)
chr7 (25-62)||(11352583-11352620)
chr7 (25-62)||(25622157-25622194)
chr7 (25-62)||(35097762-35097799)
chr7 (25-62)||(5909735-5909774)
[»] chr8 (1 HSPs)
chr8 (25-62)||(43945382-43945420)
[»] chr3 (5 HSPs)
chr3 (25-62)||(8355563-8355601)
chr3 (25-62)||(3841203-3841240)
chr3 (25-62)||(13468342-13468379)
chr3 (25-62)||(31341248-31341285)
chr3 (25-62)||(51252280-51252319)
[»] chr5 (2 HSPs)
chr5 (25-62)||(4221964-4222001)
chr5 (25-62)||(9227080-9227119)
[»] chr2 (5 HSPs)
chr2 (26-62)||(22535681-22535718)
chr2 (25-62)||(24413801-24413838)
chr2 (25-62)||(34181594-34181631)
chr2 (25-62)||(39341353-39341390)
chr2 (25-62)||(25227846-25227885)
[»] chr1 (3 HSPs)
chr1 (27-60)||(27794383-27794416)
chr1 (34-62)||(36343391-36343419)
chr1 (26-62)||(46561409-46561445)
[»] scaffold0026 (1 HSPs)
scaffold0026 (26-62)||(4484-4520)
[»] chr4 (1 HSPs)
chr4 (25-62)||(13334845-13334884)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 25516029 - 25515855
Alignment:
Q  25 tattttaca-gggggaaaccagaaatgacctatattacannnnnnnnacccaaaacacatttagaaccacaaactcactatattcattttctgcattaac 123  Q
    ||||||||| |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25516029 tattttacatgggggaaaccagaaatgacctatatta---gtgggagacccaaaacacatttagaaccacaaactcactatattcattttctgcattaac 25515933  T
Q  124 ctcttttttgagatatgcagcttaacacattcatgtagttcttagttattagcatatagcacatgacaatgagctatc 201  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25515932 ctcttttttgaggtatgcagtttaacacattcatgtagttcttagttattagcatatagcacatgacaatgagctatc 25515855  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 26064422 - 26064363
Alignment:
Q  75 aaaacacatttagaaccacaaactcactatattcattttctgcattaacctcttttttga 134  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  26064422 aaaacacaattagaaccacaaactaactatattcactttctgcattaacctcttatttga 26064363  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 26084391 - 26084332
Alignment:
Q  75 aaaacacatttagaaccacaaactcactatattcattttctgcattaacctcttttttga 134  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  26084391 aaaacacaattagaaccacaaactaactatattcactttctgcattaacctcttatttga 26084332  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 25455355 - 25455423
Alignment:
Q  125 tcttttttgagatatgcagcttaacacattcatgtagttcttagttattagcatatagcacatgacaat 193  Q
    |||| |||||| ||||||||||||||||||| |  |||||||| |||||||||||||| ||||||||||    
T  25455355 tcttatttgaggtatgcagcttaacacattccttgagttcttatttattagcatatagaacatgacaat 25455423  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 25516125 - 25516086
Alignment:
Q  75 aaaacacatttagaaccacaaactcactatattcattttc 114  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  25516125 aaaacacatttagaaccacaaactcgctatattcattttc 25516086  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 24062393 - 24062429
Alignment:
Q  26 attttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  24062393 attttacaggggaaaatcagaaatgacctatattaca 24062429  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 44581 - 44618
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  44581 tattttacaggaggaaaccagaaatgacctatattaca 44618  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 45633696 - 45633733
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45633696 tattttacagggggaaaccaaaaatgacctatattaca 45633733  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 15037404 - 15037440
Alignment:
Q  26 attttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15037404 attttacggggggaaaccagaaatgacctatattaca 15037440  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 4675986 - 4675949
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  4675986 tattttacaggggaaaaccaaaaatgacctatattaca 4675949  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 11352583 - 11352620
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  11352583 tattttacaggggggaaccggaaatgacctatattaca 11352620  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 25622194 - 25622157
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  25622194 tattttacaggggaaaaccaaaaatgacctatattaca 25622157  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 35097762 - 35097799
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||||||||| | |||||||||||||||||    
T  35097762 tattttacagggggaaacaaaaaatgacctatattaca 35097799  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 5909774 - 5909735
Alignment:
Q  25 tattttacagggggaaa--ccagaaatgacctatattaca 62  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  5909774 tattttacagggggaaaaaccagaaatgacctatattaca 5909735  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 43945382 - 43945420
Alignment:
Q  25 tattttacagg-gggaaaccagaaatgacctatattaca 62  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43945382 tattttacaggagggaaaccagaaatgacctatattaca 43945420  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 8355563 - 8355601
Alignment:
Q  25 tattttacagggggaaa-ccagaaatgacctatattaca 62  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8355563 tattttacagggggaaaaccagaaatgacctatattaca 8355601  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 3841240 - 3841203
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  3841240 tattttacaggggaaaaccaaaaatgacctatattaca 3841203  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 13468342 - 13468379
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  13468342 tattttacatggggaaaccaaaaatgacctatattaca 13468379  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 31341285 - 31341248
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||||||||| | |||||||||||||||||    
T  31341285 tattttacagggggaaacaaaaaatgacctatattaca 31341248  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 51252280 - 51252319
Alignment:
Q  25 tattttacaggggg--aaaccagaaatgacctatattaca 62  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  51252280 tattttacaggggggaaaaccagaaatgacctatattaca 51252319  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 4221964 - 4222001
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  4221964 tattttacaggggaaaaccaaaaatgacctatattaca 4222001  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 9227080 - 9227119
Alignment:
Q  25 tattttacaggggg--aaaccagaaatgacctatattaca 62  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  9227080 tattttacaggggggaaaaccagaaatgacctatattaca 9227119  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 22535681 - 22535718
Alignment:
Q  26 attttacagggggaaa-ccagaaatgacctatattaca 62  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22535681 attttacagggggaaaaccagaaatgacctatattaca 22535718  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 24413801 - 24413838
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  24413801 tattttacagggggaaaccaaaaatgacttatattaca 24413838  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 34181631 - 34181594
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  34181631 tattttacagggggaaatcggaaatgacctatattaca 34181594  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 39341353 - 39341390
Alignment:
Q  25 tattttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  39341353 tattttacaggggaaaaccaaaaatgacctatattaca 39341390  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 25227885 - 25227846
Alignment:
Q  25 tattttacaggggg--aaaccagaaatgacctatattaca 62  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  25227885 tattttacaggggggaaaaccagaaatgacctatattaca 25227846  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 27794416 - 27794383
Alignment:
Q  27 ttttacagggggaaaccagaaatgacctatatta 60  Q
    ||||||||||||||||| ||||||||||||||||    
T  27794416 ttttacagggggaaaccggaaatgacctatatta 27794383  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 36343391 - 36343419
Alignment:
Q  34 gggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||||||||||||||||||||    
T  36343391 gggggaaaccagaaatgacctatattaca 36343419  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 46561445 - 46561409
Alignment:
Q  26 attttacagggggaaaccagaaatgacctatattaca 62  Q
    ||||||||| || ||||||||||||||||||||||||    
T  46561445 attttacagaggaaaaccagaaatgacctatattaca 46561409  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 4520 - 4484
Alignment:
Q  26 attttacagggggaaaccagaaatgacctatattaca 62  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  4520 attttacaggggaaaatcagaaatgacctatattaca 4484  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 13334884 - 13334845
Alignment:
Q  25 tattttacaggggg--aaaccagaaatgacctatattaca 62  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  13334884 tattttacaggggggaaaaccagaaatgacctatattaca 13334845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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