View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8496_low_9 (Length: 434)
Name: NF8496_low_9
Description: NF8496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8496_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 44006302 - 44005921
Alignment:
| Q |
1 |
gttactttagacaggacaattgatcactttcataataacatttggttgtagnnnnnnncaaagaaaaacatccgattactatagacannnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44006302 |
gttactttagacaggacaattgatcactttcataataacatttggttgtagtttttttcaaagaaaaacatccgattactatagacatatttttttttt- |
44006204 |
T |
|
| Q |
101 |
gaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaacaagaaaaataaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44006203 |
gaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaa---gaaaaataaca |
44006107 |
T |
|
| Q |
201 |
gcagcagctgagctaacacagtaataattactatagacatggcagttgcttaaacaaaataaatctgaattatttgcataatcatgttactttttattct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006106 |
gcagcagctgagctaacacagtaataattactatagacatggcagttgcttaaacaaaataaatctgaattatttgcataatcatgttactttttattct |
44006007 |
T |
|
| Q |
301 |
cccgttatagatcaataccaacaaaagtaaagacaatggatatgtaagaacatagccatgcagatgacactaggaattcctttttt |
386 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006006 |
cccgttatagatcaatatcaacaaaagtaaagacaatggatatgtaagaacatagccatgcagatgacactaggaattcctttttt |
44005921 |
T |
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