View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8497_low_12 (Length: 239)
Name: NF8497_low_12
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8497_low_12 |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 40035681 - 40035460
Alignment:
| Q |
18 |
gtaacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcctaaaggaaacacaaacacacaaaattaaccaaatattcaatcacc |
117 |
Q |
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| T |
40035681 |
gtaacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcctaaaggaaacacaaacacacaaaattaaccaaatattcaatcacc |
40035582 |
T |
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| Q |
118 |
ataacacaaataacaaccaatattacgaatatgatgattcaaaatctcaccttggttgcaagttgcttcctaggtgcctttccaccagtagacttacgag |
217 |
Q |
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| T |
40035581 |
ataacacaaataacaaccaatattatgaatatgatgattcaaaatctcaccttggttgcaagtggtttcctaggtgcctttccaccagtagacttacgag |
40035482 |
T |
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| Q |
218 |
cagtttgcttggtacgtgccat |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
40035481 |
cagtttgcttggtacgtgccat |
40035460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 26394222 - 26394416
Alignment:
| Q |
20 |
aacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcctaaaggaaacacaaacac--acaaaattaaccaaatat--tcaatca |
115 |
Q |
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| T |
26394222 |
aacgacgtggtttcttaactctaccagtagtgggtgcagacttacgtgcagcctaaaggaaccgaaaaaaccaaaaaaattaaccaaatatattcaatca |
26394321 |
T |
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| Q |
116 |
ccataacacaaataacaaccaat-attacgaatatgatg-attcaaaatctcaccttggttgcaagttgcttcctaggtgcctttccaccagtag |
208 |
Q |
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| T |
26394322 |
ccataatgcaaataacattcaatgattatgaatatgatggattcaaaaactcaccttggttgcaagttgcttcctaggtgcctttccaccagtag |
26394416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 40044830 - 40044757
Alignment:
| Q |
166 |
accttggttgcaagttgcttcctaggtgcctttccaccagtagacttacgagcagtttgcttggtacgtgccat |
239 |
Q |
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| T |
40044830 |
accttggttgcaagttgcttccttggtgcctttccacctgttgacttacgagcagtttgcttggtacgtgccat |
40044757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 40044984 - 40044919
Alignment:
| Q |
18 |
gtaacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcctaaaggaaaca |
83 |
Q |
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| T |
40044984 |
gtaacgatgtggcttcttaactccaccagtagttggtgcagacttacgtgcagcctaaaggtaaca |
40044919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 7594904 - 7594977
Alignment:
| Q |
166 |
accttggttgcaagttgcttcctaggtgcctttccaccagtagacttacgagcagtttgcttggtacgtgccat |
239 |
Q |
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| T |
7594904 |
accttggtggcgagctgcttccttggagccttaccaccggtagacttgcgagcggtttgcttggtacgagccat |
7594977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 41943763 - 41943691
Alignment:
| Q |
167 |
ccttggttgcaagttgcttcctaggtgcctttccaccagtagacttacgagcagtttgcttggtacgtgccat |
239 |
Q |
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| T |
41943763 |
ccttggtggccagttgcttccttggagccttgccaccggtggatttgcgagcagtttgcttagtacgagccat |
41943691 |
T |
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