View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8497_low_14 (Length: 226)

Name: NF8497_low_14
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8497_low_14
NF8497_low_14
[»] chr4 (9 HSPs)
chr4 (1-157)||(53745261-53745417)
chr4 (1-108)||(8649651-8649758)
chr4 (1-108)||(8661458-8661565)
chr4 (19-132)||(22209231-22209344)
chr4 (1-131)||(54568416-54568546)
chr4 (1-140)||(22206137-22206277)
chr4 (1-101)||(26626129-26626229)
chr4 (1-115)||(31523639-31523753)
chr4 (60-140)||(23137508-23137588)
[»] chr6 (5 HSPs)
chr6 (1-140)||(24845661-24845800)
chr6 (8-159)||(23389228-23389374)
chr6 (1-132)||(8497726-8497858)
chr6 (26-131)||(27771127-27771231)
chr6 (75-140)||(27118793-27118858)
[»] chr2 (2 HSPs)
chr2 (1-123)||(28495471-28495594)
chr2 (1-106)||(5076837-5076943)
[»] chr8 (2 HSPs)
chr8 (1-131)||(8813450-8813580)
chr8 (42-140)||(44071379-44071476)
[»] chr5 (3 HSPs)
chr5 (1-91)||(14988500-14988590)
chr5 (26-131)||(12873978-12874083)
chr5 (61-140)||(16056583-16056662)
[»] chr1 (4 HSPs)
chr1 (2-139)||(39333001-39333139)
chr1 (1-140)||(17288024-17288164)
chr1 (1-106)||(49193606-49193711)
chr1 (60-140)||(19039253-19039333)
[»] scaffold0001 (1 HSPs)
scaffold0001 (2-106)||(414412-414516)
[»] chr7 (1 HSPs)
chr7 (2-144)||(37446795-37446937)
[»] chr3 (3 HSPs)
chr3 (1-115)||(33367747-33367861)
chr3 (60-134)||(33813574-33813648)
chr3 (173-220)||(6466104-6466151)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 53745417 - 53745261
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53745417 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatatt 53745318  T
Q  101 tacattaatgtgactgattcgataaacttctacgcggtattaccgcacgggtcaaga 157  Q
    |||||||||| |||||||| ||| ||||||||| | |||||||||||||||||||||    
T  53745317 tacattaatgcgactgatttgattaacttctacacagtattaccgcacgggtcaaga 53745261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8649758 - 8649651
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    |||||||||||||||||||||||||||||| || |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8649758 tttttgttatgtatgctaccatttaattttttttccttttttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 8649659  T
Q  101 tacattaa 108  Q
    ||||||||    
T  8649658 tacattaa 8649651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8661565 - 8661458
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    |||||||||||||||||||||||||||||| || |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8661565 tttttgttatgtatgctaccatttaattttttttccttttttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 8661466  T
Q  101 tacattaa 108  Q
    ||||||||    
T  8661465 tacattaa 8661458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 22209231 - 22209344
Alignment:
Q  19 ccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgat 118  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  || |||||||    
T  22209231 ccatttcattttgttgctattgttgtcttagaagggaacatatttttaaattgttataaaacttctattaactatatatgtttacatttttgcgactgat 22209330  T
Q  119 tcgataaacttcta 132  Q
    ||||| ||||||||    
T  22209331 tcgattaacttcta 22209344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 54568546 - 54568416
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||| |  ||||| ||||||||||||||||||||    
T  54568546 ttttttttatgtatgctaccatttcattttgttgctattgttgtcgtagaagggaacatgtttttaaattttgttaaaacttctattaactatatatgtt 54568447  T
Q  101 tacattaatgtgactgattcgataaacttct 131  Q
    |||| |  ||||||| ||||| | |||||||    
T  54568446 tacagtgttgtgacttattcgtttaacttct 54568416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 22206137 - 22206277
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatattttt-aaattgttctaaaatttctattaactatatatgt 99  Q
    |||||||||||||||||||||||| |||||||| ||||||| || ||||||| |||||||||||| ||| || | | ||| |||||| ||||||||||||    
T  22206137 tttttgttatgtatgctaccatttcattttgttgctattgtagtattagaagtgaacatatttttaaaactgatatgaaacttctatcaactatatatgt 22206236  T
Q  100 ttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    |||||||| || || ||||||||| || ||||||| |||||    
T  22206237 ttacattattgcgattgattcgattaatttctacgtggtat 22206277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26626229 - 26626129
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    |||||||||||||||||||||||| |||||| |  |||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||  |||||||    
T  26626229 tttttgttatgtatgctaccatttcattttgctgttattgttgtcttaggagggaacatatttttaaattgctataaaacttctattaactgaatatgtt 26626130  T
Q  101 t 101  Q
    |    
T  26626129 t 26626129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 31523753 - 31523639
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    ||||| ||||||||| |||||| | ||||| || ||||||||||  |||||||||||||||||||| ||| || ||||| || |||||||||||||||||    
T  31523753 tttttcttatgtatgttaccatctcattttattgctattgttgtagtagaagggaacatatttttatatttttataaaacttttattaactatatatgtt 31523654  T
Q  101 tacattaatgtgact 115  Q
    ||||||  |||||||    
T  31523653 tacattgttgtgact 31523639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 23137588 - 23137508
Alignment:
Q  60 atttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||| || || | ||||||| |||||||||| |||||    
T  23137588 atttttaaattgttataaaacttctattaactatatatatttacattattgcgattaattcgattaacttctacgtggtat 23137508  T

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Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 24845800 - 24845661
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24845800 tttttgttatgtatgctaccatttaattttgttccttttgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 24845701  T
Q  101 tacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    |||||||||| |||||||||||| |||||||||| |||||    
T  24845700 tacattaatgcgactgattcgattaacttctacgtggtat 24845661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 23389228 - 23389374
Alignment:
Q  8 tatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacatta 107  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  23389228 tatgtatgctaccatttcattttgtttctattgttgtcttataagggaacatatttttaaattgttataaaacttcttttaactatatatgtttacatta 23389327  T
Q  108 atgtgactgattcgataaacttctacgcggtattaccgcacgggtcaagagt 159  Q
     || |||    || || |||||||||  |||| |||||||||||||||||||    
T  23389328 ttgcgac----tcaattaacttctacatggta-taccgcacgggtcaagagt 23389374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8497858 - 8497726
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatattttt-aaattgttctaaaatttctattaactatatatgt 99  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||| || | ||||| |||||| || ||||||| |    
T  8497858 tttttgttatctatgctaccatttcattttgttgctattgttgtcttagaagtgaacatatttttaaaactgatataaaacttctatcaattatatatat 8497759  T
Q  100 ttacattaatgtgactgattcgataaacttcta 132  Q
    |||||||| ||||| ||||||||| || |||||    
T  8497758 ttacattattgtgaatgattcgattaaattcta 8497726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 27771127 - 27771231
Alignment:
Q  26 attttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataa 125  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||  || ||| | ||||||||||||||||||||||||||  || |||| ||||| | |    
T  27771127 attttgttgctattgttgtcgtagaagggaacata-ttttaaatctttataagacttctattaactatatatgtttacattgttgcgacttattcgttta 27771225  T
Q  126 acttct 131  Q
    ||||||    
T  27771226 acttct 27771231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 27118858 - 27118793
Alignment:
Q  75 taaaatttctattaactatatatgtttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    ||||| ||||||||||||||||||||||||||  || |||| ||||| | ||||||| | ||||||    
T  27118858 taaaacttctattaactatatatgtttacattgttgcgactcattcgtttaacttcttctcggtat 27118793  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 28495594 - 28495471
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatg-t 99  Q
    |||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||| |    
T  28495594 tttttgttatgtatgctaccatttcattttgctgctattgttgtcttaggagggaacatatttttaaattgctataaaatttctattaactaaatatgtt 28495495  T
Q  100 ttacattaatgtgactgattcgat 123  Q
    |||||||| || || |||||||||    
T  28495494 ttacattattgcgattgattcgat 28495471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 5076837 - 5076943
Alignment:
Q  1 tttttgttatgtatgctaccatttaatttt-gttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgt 99  Q
    ||||| |||||||||||||| ||| ||||| ||| ||||||||||| ||||||||||||||| |||||||  |  |||||||||||| ||||||||||||    
T  5076837 ttttttttatgtatgctaccgtttcatttttgtttctattgttgtcgtagaagggaacatatgtttaaatgttgttaaaatttctatcaactatatatgt 5076936  T
Q  100 ttacatt 106  Q
    |||||||    
T  5076937 ttacatt 5076943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 8813450 - 8813580
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||| |  ||||| ||||||||||||||||||||    
T  8813450 ttttttttatgtatgctaccatttcaatttgttgctattgttgtcgtagaagggaacatatttttaaattttgttaaaacttctattaactatatatgtt 8813549  T
Q  101 tacattaatgtgactgattcgataaacttct 131  Q
    ||||||  || |||| ||||| | |||||||    
T  8813550 tacattgttgcgacttattcgtttaacttct 8813580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 44071476 - 44071379
Alignment:
Q  42 tgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||  || |||  ||||||| |||||||||| |||||    
T  44071476 tgtcttagaagggaacatatttt-aaattgttataaaacttctattaattatatatgtttacatttttgcgaccaattcgattaacttctacgtggtat 44071379  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 14988500 - 14988590
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaact 91  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  14988500 tttttgttatgtatgctaccttttcattttgttgctattgttgtcttagaagggaacatatttttaaattgttataaaacttccattaact 14988590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 12873978 - 12874083
Alignment:
Q  26 attttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataa 125  Q
    |||||||| ||||||||||| |||||||||||||||||||||||  || ||| | ||||||||||||||||||||||||||  || |||| ||||| | |    
T  12873978 attttgttgctattgttgtcgtagaagggaacatatttttaaatctttataagacttctattaactatatatgtttacattgttgcgacttattcgttta 12874077  T
Q  126 acttct 131  Q
    ||||||    
T  12874078 acttct 12874083  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 16056662 - 16056583
Alignment:
Q  61 tttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||| || || ||||||||| |||||||||| |||||    
T  16056662 tttttaaattgttataaaacttctattaactatatatatttacattattgcgattgattcgattaacttctacgtggtat 16056583  T

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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 39333139 - 39333001
Alignment:
Q  2 ttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt- 100  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||| || | ||     
T  39333139 ttttgttatgtatgctaccatttcattttgctgctattgttgtcttagaagggaacatatttttaaattgctataaaacttctatcaactaaatctattg 39333040  T
Q  101 tacattaatgtgactgattcgataaacttctacgcggta 139  Q
    ||||||| || || ||||||||| ||||| |||| ||||    
T  39333039 tacattattgcgattgattcgattaacttttacgtggta 39333001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 17288024 - 17288164
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatg-t 99  Q
    |||||||||| ||||||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||| || || |    
T  17288024 tttttgttatatatgctaccatttcattttgctgctattgttgtcttaggagggaacatatttttaaattgctataaaacttctattaactaaatctgtt 17288123  T
Q  100 ttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    |||||||| || || ||||| ||| ||||| |||| |||||    
T  17288124 ttacattattgcgattgatttgattaacttttacgtggtat 17288164  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 49193711 - 49193606
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    ||||| |||||||||||||||| | |||||||| ||||||||||  ||||||||||| |||||||| ||| || ||||| || |||||||||||||||||    
T  49193711 tttttcttatgtatgctaccatctcattttgttgctattgttgtagtagaagggaacttatttttatatttttataaaacttttattaactatatatgtt 49193612  T
Q  101 tacatt 106  Q
    ||||||    
T  49193611 tacatt 49193606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 19039333 - 19039253
Alignment:
Q  60 atttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataaacttctacgcggtat 140  Q
    |||||| ||||||| ||||| ||||||||| ||||||||||||||||| || || ||||||||| || ||||||| |||||    
T  19039333 attttttaattgttataaaacttctattaaatatatatgtttacattattgcgattgattcgattaatttctacgtggtat 19039253  T

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Target: scaffold0001 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 414412 - 414516
Alignment:
Q  2 ttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgttt 101  Q
    |||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||  |  |||||||||||| ||||||||||||||    
T  414412 tttttttatgtatgctaccatttcattttgtttctattgttgtcgtagaagggaacatatgtttaaatgttgttaaaatttctatcaactatatatgttt 414511  T
Q  102 acatt 106  Q
    |||||    
T  414512 acatt 414516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 37446937 - 37446795
Alignment:
Q  2 ttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgttt 101  Q
    |||| |||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||| | |  ||||| |||||||||| ||||||||||    
T  37446937 tttttttatgtatgctaccattccattttgttgctattgttgtcgtagaagggaacatatttttaaaatttgttaaaacttctattaacgatatatgttt 37446838  T
Q  102 acattaatgtgactgattcgataaacttctacgcggtattacc 144  Q
    |||||  || |||| ||||| | ||||||| | ||||| ||||    
T  37446837 acattgttgcgacttattcgtttaacttcttctcggtagtacc 37446795  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 33367747 - 33367861
Alignment:
Q  1 tttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtt 100  Q
    ||||| |||||||||||||||| | |||||||| ||||||||||  |||||||||||||||||||| ||| || ||||| || |||||||||||||||||    
T  33367747 tttttcttatgtatgctaccatctcattttgttgctattgttgtagtagaagggaacatatttttatatttttataaaacttttattaactatatatgtt 33367846  T
Q  101 tacattaatgtgact 115  Q
    ||||||  |||||||    
T  33367847 tacattgttgtgact 33367861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 33813648 - 33813574
Alignment:
Q  60 atttttaaattgttctaaaatttctattaactatatatgtttacattaatgtgactgattcgataaacttctacg 134  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||| | || || ||||||||| ||||||||||    
T  33813648 atttttaaattgttataaaacttctaataactatatatgtttacatgattgcgattgattcgattaacttctacg 33813574  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 6466151 - 6466104
Alignment:
Q  173 aacatacatatagttatctcaccactgcacaaggatgtccatctcatt 220  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  6466151 aacatacatatagttatctcaccactgcacaaggatgtgtatctcatt 6466104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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