View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8497_low_2 (Length: 366)
Name: NF8497_low_2
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8497_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 65 - 350
Target Start/End: Complemental strand, 32568123 - 32567836
Alignment:
| Q |
65 |
cagcaacacatggaaatgatttccaaacagagttctcaacataaccattttatatcacttactgcattatttt-ccagaatttttctagttcttaagttt |
163 |
Q |
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|||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32568123 |
cagcaacacatggaaatgttttccgaacacagttctcaacagaaccattttatatcaattactgcattatttttccagaatttttctagttcttaagttt |
32568024 |
T |
|
| Q |
164 |
cagccaaaaatctttttaactttt-cactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatactcattatatatatt |
262 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32568023 |
cagccaaaaatctttttaactttttcactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatacccattatatatatt |
32567924 |
T |
|
| Q |
263 |
atcaaataagcaaaattgtttcttcaagagaagcatgaatccgaactttactggaaagtaccattagggtaatttgacaataagtttc |
350 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
32567923 |
atcaaataagcaaaattgtttcttcaagagaagtatgaatctgaactttactggaaagtaccagtagggtagtttgacaataagtttc |
32567836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 68 - 350
Target Start/End: Original strand, 44122816 - 44123099
Alignment:
| Q |
68 |
caacacatggaaatgatttccaaacagagttctcaacataaccattttatatcacttactgcattattttccagaatttttctagttcttaagtttcagc |
167 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
44122816 |
caacacatggaaatgatttccgaacacagttctaaacataaccattttatataacttactccattatttttcagaatttttctagttcttaagtttcagc |
44122915 |
T |
|
| Q |
168 |
caaaaatctttttaactttt-cactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatactcattatatatattatca |
266 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44122916 |
caaaaatctttttaactttttcactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatacccattatatatattatca |
44123015 |
T |
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| Q |
267 |
aataagcaaaattgtttcttcaagagaagcatgaatccgaactttactggaaagtaccattagggtaatttgacaataagtttc |
350 |
Q |
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||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
44123016 |
aataagcaaaattatttcttcaagagaagtatgaatctgaactttactggaaagtaccactagggtaatttgataataagtttc |
44123099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 65 - 350
Target Start/End: Complemental strand, 12846757 - 12846473
Alignment:
| Q |
65 |
cagcaacacatggaaatgatttccaaacagagttctcaacataaccattttatatcacttactgcattattttc-cagaatttttctagttcttaagttt |
163 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12846757 |
cagcaacacatggaaatgtttttcgaacacagttctcaacataaccattttatatcaattactgcattattttttcagaatttttctagttcttaagttt |
12846658 |
T |
|
| Q |
164 |
cagccaaaaatctttttaacttttcactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatactcattatatatatta |
263 |
Q |
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|||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
12846657 |
cagccaaaaatcttttaactttttcactgctggaataagaaacggttcttcaagagaaccatggatctaaacttcagatgaatacccattatatatatta |
12846558 |
T |
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| Q |
264 |
tcaaataagcaaaattgtttcttcaagagaagcatgaatccgaactttactggaaagtaccattagggtaatttgacaataagtttc |
350 |
Q |
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|||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||| |||| |
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| T |
12846557 |
tcaaataagc--aattgtttcttcaagagaagtatgaatctgaactttactagaaagtaccagtagggtaatttgacaataaatttc |
12846473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 65 - 350
Target Start/End: Complemental strand, 28224937 - 28224651
Alignment:
| Q |
65 |
cagcaacacatggaaatgatttccaaacagagttctcaacataaccattttatatcacttactgcattatttt-ccagaatttttctagttcttaagttt |
163 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28224937 |
cagcaacacatggaaatgttttccaaacacagttctcaacataaccattttatatcaattactgcattatttttccagaatttttctagttcttaagttt |
28224838 |
T |
|
| Q |
164 |
cagccaaaaatctttttaacttttc--actgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatactcattatatatat |
261 |
Q |
| |
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|||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||| |
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| T |
28224837 |
ttgccaaaaatcttttgaactttttctattgttggaataagaaacggttcttcaagagaaccatggatctaaacttcaaatggatacccattatatat-- |
28224740 |
T |
|
| Q |
262 |
tatcaaataagcaaaattgtttcttcaagagaagcatgaatccgaactttactggaaagtaccattagggtaatttgacaataagtttc |
350 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
28224739 |
tatcaaataagcaaaattgtttcttcaagagaagtatgaatctgaactttactggaaagtaacagtagggtaatttgacaataagtttc |
28224651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 303
Target Start/End: Complemental strand, 3484727 - 3484487
Alignment:
| Q |
65 |
cagcaacacatggaaatgatttccaaacagagttctcaacataaccattttatatcacttactgcattatttt-ccagaatttttctagttcttaagttt |
163 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3484727 |
cagcaacacatggaaatgttttccgaactcagttctcatcataacaattttatatcaattactgcattatttttccagaatttttctagttcttaagttt |
3484628 |
T |
|
| Q |
164 |
cagccaaaaatctttttaactttt-cactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatactcattatatatatt |
262 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3484627 |
cagccaaaaatctttttaactttttcactgttggaataagaaacggttcttcaagagaaccatggatctaaacttaagatgaatacccattatatatatt |
3484528 |
T |
|
| Q |
263 |
atcaaataagcaaaattgtttcttcaagagaagcatgaatc |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3484527 |
atcaaataagcaaaattgtttcttcaagagaagtatgaatc |
3484487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 65 - 231
Target Start/End: Complemental strand, 5666792 - 5666623
Alignment:
| Q |
65 |
cagcaacacatggaaatgatttc--caaacagagttctcaacataaccattttatatcacttactgcattattttcc-agaatttttctagttcttaagt |
161 |
Q |
| |
|
|||||||||||||||||| |||| | |||| | ||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||| |
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| T |
5666792 |
cagcaacacatggaaatgttttctccgaacacaattctcaacataaccattttatatcaattactgcattatttttctagaatttttttagttcttaagt |
5666693 |
T |
|
| Q |
162 |
ttcagccaaaaatctttttaacttttcactgttggaataagaaacggttcttcaagagaaccatggatct |
231 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5666692 |
ttcagccaaaaatcttttaactttttcactgttggaataagaaacggttcttcaagagaaccatggatct |
5666623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 215 - 350
Target Start/End: Complemental strand, 5666600 - 5666468
Alignment:
| Q |
215 |
aagagaaccatggatctaaacttaagatgaatactcattatatatattatcaaataagcaaaattgtttcttcaagagaagcatgaatccgaactttact |
314 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
5666600 |
aagagaaccatggatctaaacttcagatggatacccattatatatat---caaataagcaaaattgtttcttcaagagaagtatgaatctaaaatttact |
5666504 |
T |
|
| Q |
315 |
ggaaagtaccattagggtaatttgacaataagtttc |
350 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |
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|
| T |
5666503 |
ggaaagtaccagtagggtaatttgacaataagtttc |
5666468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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