View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8497_low_3 (Length: 350)

Name: NF8497_low_3
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8497_low_3
NF8497_low_3
[»] chr2 (5 HSPs)
chr2 (12-335)||(27150684-27151007)
chr2 (1-335)||(7702761-7703108)
chr2 (240-335)||(24479726-24479821)
chr2 (10-150)||(24479476-24479619)
chr2 (1-31)||(31481110-31481140)
[»] chr4 (3 HSPs)
chr4 (1-335)||(37750426-37750761)
chr4 (124-335)||(37744518-37744752)
chr4 (256-335)||(24558469-24558547)
[»] chr8 (4 HSPs)
chr8 (21-280)||(14997964-14998228)
chr8 (236-335)||(6223896-6223995)
chr8 (236-335)||(17633898-17633997)
chr8 (57-172)||(6223743-6223863)
[»] chr1 (4 HSPs)
chr1 (1-335)||(39367571-39367911)
chr1 (4-158)||(18308481-18308636)
chr1 (1-335)||(17113255-17113592)
chr1 (174-336)||(18308690-18308863)
[»] chr5 (4 HSPs)
chr5 (1-155)||(31571345-31571496)
chr5 (1-57)||(38449696-38449752)
chr5 (1-83)||(10869983-10870068)
chr5 (291-325)||(31571502-31571536)
[»] chr7 (9 HSPs)
chr7 (125-335)||(26618575-26618795)
chr7 (174-335)||(26620539-26620711)
chr7 (236-324)||(26608019-26608107)
chr7 (1-80)||(26608253-26608335)
chr7 (13-80)||(26618795-26618865)
chr7 (125-172)||(26620738-26620785)
chr7 (256-305)||(8248627-8248676)
chr7 (125-166)||(26608212-26608253)
chr7 (10-80)||(26620785-26620858)
[»] chr3 (3 HSPs)
chr3 (256-335)||(25338579-25338658)
chr3 (1-83)||(35083293-35083378)
chr3 (58-90)||(36035838-36035870)
[»] scaffold0002 (1 HSPs)
scaffold0002 (240-335)||(445711-445806)
[»] chr6 (4 HSPs)
chr6 (256-333)||(1943165-1943242)
chr6 (183-335)||(24631687-24631846)
chr6 (261-312)||(30129167-30129218)
chr6 (1-70)||(30129391-30129463)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 27151007 - 27150684
Alignment:
Q  12 aatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatcaactatttgga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27151007 aatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaatttagatcaactatttgga 27150908  T
Q  112 caacattgcaatgaaataagatatcctaaataaacctagtaataatcactttttcgaccaacaaaataaaaattagccatgaggggatctaagcaagata 211  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27150907 taagattgcaatgaaataagatatcctaaataaacctagtaataatcactttttccaccaacaaaataaaaattagccatgaggggatctaagcaagata 27150808  T
Q  212 atgcaacaaatgtcttcttggctttttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaa 311  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27150807 atgcaacaaatatcttcttggctttttcatagcttctctggaaacaacaaaagtcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaa 27150708  T
Q  312 taaaagtaaatttgaggtataaat 335  Q
    ||||||||||||||||||||||||    
T  27150707 taaaagtaaatttgaggtataaat 27150684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 7702761 - 7703108
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatc 100  Q
    |||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  7702761 tttttgtactcaatctaccacattgaatctagagattgcataagtgtttttacatgatccaagcaaatcaaaatactacattttgatcaaaatttagatc 7702860  T
Q  101 aactattt-ggacaacattgcaatgaaataagatatcctaaataaacctagtaataatcactttttcgaccaac------aaaataaaaa----ttagcc 189  Q
     |  |||| ||| ||||||  ||| ||||||||||||||||      | |||||||||||||||||| | |||       ||||||||||    ||||||    
T  7702861 gatgattttggataacattataatcaaataagatatcctaa------ccagtaataatcactttttccatcaaattaaaaaaaataaaaaaaaattagcc 7702954  T
Q  190 atgaggggatctaagcaagataatgcaacaaatgtcttc-ttggc-------tttttcatagcttctctggaaacaacaaaaatcttctagctgcaagta 281  Q
    ||||||| |||||| |||| ||||||||||||  ||||  || ||       | |||||||||||||||||||||||||||| |||||||||||||||||    
T  7702955 atgagggaatctaaccaagctaatgcaacaaaaatctttgtttgcaaaaccatctttcatagcttctctggaaacaacaaaagtcttctagctgcaagta 7703054  T
Q  282 tttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    |||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  7703055 tttagaaggaacgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 7703108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 24479726 - 24479821
Alignment:
Q  240 atagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    |||||||| || ||| |||||||| |||||||||| |||||||||| | | ||| ||| |||||||| ||| ||||||||||||||||||||||||    
T  24479726 atagcttcacttgaagcaacaaaagtcttctagctacaagtatttagatggaatatgataacaaaaataaagtaaaagtaaatttgaggtataaat 24479821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 24479476 - 24479619
Alignment:
Q  10 tcaatccaccacattgaatctagagattacataat---tgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatcaactat 106  Q
    ||||||||||||||| |||||||| || | ||||    ||||||||||| |||||||||| ||| ||||||||||||  ||||| || |||||| |  ||    
T  24479476 tcaatccaccacattaaatctagaaatcatataacaagtgtttttacataatccaagcaa-tcacaatactacatttggatcaacacgtagatccatcat 24479574  T
Q  107 ttg-gacaacattgcaatgaaataagatatcctaaataaacctag 150  Q
    ||  || |||||| ||| ||||||||||||||||| ||| |||||    
T  24479575 tttagataacattacaaggaaataagatatcctaactaagcctag 24479619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31481110 - 31481140
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatcta 31  Q
    |||||||||||||||||||||||||||||||    
T  31481110 tttttgtagtcaatccaccacattgaatcta 31481140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 37750761 - 37750426
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatc 100  Q
    |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||            |||||    
T  37750761 tttttgtactcaatccaccacattgaatctaaagattacataagtgtttttacatgatccaaacaattcaaaatactacattt------------agatc 37750674  T
Q  101 aactattt-ggacaacattgcaat--gaaataagatatcctaaataaacctagtaataatcactttttcgaccaacaaaataaaaattagccatgagggg 197  Q
    ||| |||| ||| |||||| |||   ||||||||||||||||| |||||||||||||||||| |||||| | ||| |||| ||| ||||||||||| |||    
T  37750673 aacgattttggataacattacaaatcgaaataagatatcctaactaaacctagtaataatcattttttccaacaaaaaaa-aaacattagccatgatggg 37750575  T
Q  198 atctaagcaagataatgcaacaaatgtcttcttggctt-----------tttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaa 286  Q
     |||||||||| ||||||||||||  ||||||||||||           |||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  37750574 gtctaagcaagctaatgcaacaaaaatcttcttggcttgtaacaccatctttcatagcttctctggaaacaacaaaagtcttctagttgcaagtatttag 37750475  T
Q  287 aagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37750474 aaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 37750426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 124 - 335
Target Start/End: Complemental strand, 37744752 - 37744518
Alignment:
Q  124 gaaataagatatcctaaataaacctagtaataatcactttttcgaccaaca---------aaataaaaa---ttagccatgaggggatctaagcaagata 211  Q
    |||||||||||||| || ||||||||||||||||||||||||| ||||| |         |||||||||   ||||||||||||||||||||||||| ||    
T  37744752 gaaataagatatcccaactaaacctagtaataatcactttttccaccaaaatttaaaataaaataaaaaacattagccatgaggggatctaagcaagcta 37744653  T
Q  212 atgcaacaaatgtcttcttggctt-----------tttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaa 300  Q
    ||||||||||  |||| |||| |            ||||||||||||||| |||||||||||| |||||||| |||||||||||| ||| ||||||||||    
T  37744652 atgcaacaaaaatctttttggatcgcaacaccatctttcatagcttctcttgaaacaacaaaagtcttctaggtgcaagtatttagaaggaatgtgagaa 37744553  T
Q  301 caaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    |||||||||||||||||||||||||||||||||||    
T  37744552 caaaaacaaaataaaagtaaatttgaggtataaat 37744518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 24558547 - 24558469
Alignment:
Q  256 caacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    ||||||||||||| |||||| ||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  24558547 caacaaaaatcttttagctgtaagtatt-agaaggaatgtgagtacaaaaacaaaataaaagtaaatttgaggtataaat 24558469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 14997964 - 14998228
Alignment:
Q  21 cattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatcaacta-tttggacaacattg 119  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| | |||||| ||||||     
T  14997964 cattgaatctagaaattacgtaagtgtttttacatgatccaagcaaattaaaatactacattttgatcaaaatttagatcaacgattttggataacatta 14998063  T
Q  120 caatgaaataagatatcctaaataaacctagtaataatcactttttcgaccaacaaaataaaaattagccatgaggggatctaagcaagataatgcaaca 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |  ||  |||  |||||||||||||| |   |||||||||| ||||||||||    
T  14998064 caatgaaataagatatcctaactaaacctagtaataatcactttttccaaaaaataaaataaaattagccatgaagtcttctaagcaagctaatgcaaca 14998163  T
Q  220 aatgtcttcttggctt----tttcatagcttctctggaaacaacaaaaatcttctagctgcaagt 280  Q
    ||  ||||||||| ||       ||||| |||| |||||||| ||||| ||||||||||||||||    
T  14998164 aaaatcttcttggtttgcaacaccatagtttctttggaaacagcaaaagtcttctagctgcaagt 14998228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 6223896 - 6223995
Alignment:
Q  236 tttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  6223896 tttcatagcttctctcgaaacaacaaaagtcttctagctgcaagtatttagaaggaatatgggaacaaaaacaaaataaaagtaaatttgaggtataaat 6223995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 17633997 - 17633898
Alignment:
Q  236 tttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    ||||||| |||| || ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||    
T  17633997 tttcataacttcacttgaagcaacaaaaatcttctagctgcaagtatttagaaggaatgtgagaacaaaaacaaagtaaaagtaaattttaggtataaat 17633898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 6223743 - 6223863
Alignment:
Q  57 atccaagcaaatcaaaatactacattttcatcaa--aac--ttagatcaactattt-ggacaacattgcaatgaaataagatatcctaaataaacctagt 151  Q
    |||||||||||||||||||||||||||| |||||  |||  |||||| |  | ||| |||  ||||| ||||||||||||||||||||| |||||| |||    
T  6223743 atccaagcaaatcaaaatactacattttgatcaatcaacatttagataattttttttggatgacattacaatgaaataagatatcctaactaaacccagt 6223842  T
Q  152 aataatcactttttcgaccaa 172  Q
    ||||||||||||||| |||||    
T  6223843 aataatcactttttctaccaa 6223863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 39367911 - 39367571
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatc 100  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  39367911 tttttttactcaatccaccacattgaatctagagattacataagtgtttttacatgatccaagcaaatcaaaatactacattttgatcaaaatttagat- 39367813  T
Q  101 aactatttggacaacattgcaatgaaataagatatcctaaataaacctagtaataatcactttttcgaccaa----caaaataaaa-----------att 185  Q
                       ||||||||||||||||||||| |||||||||||| |||||||||||| |||||     |||||||||           |||    
T  39367812 -------------------caatgaaataagatatcctaactaaacctagtaacaatcactttttccaccaaaaattaaaataaaataaaaaaaaacatt 39367732  T
Q  186 agccatgaggggatctaagc-aagataatgcaacaaatgtcttcttggc-----------tttttcatagcttctctggaaacaacaaaaatcttctagc 273  Q
    |||||||| ||||||||||| ||| ||||||||||||  ||| ||||||           ||||||||||||||  |||||||||||||| |||||||||    
T  39367731 agccatga-gggatctaagcaaagctaatgcaacaaaaatctgcttggcttgcaacaccatttttcatagcttccttggaaacaacaaaagtcttctagc 39367633  T
Q  274 tgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39367632 tacaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 39367571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 18308481 - 18308636
Alignment:
Q  4 ttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatcaac 103  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  18308481 ttgtactcaatccaccacattgaatctagaaattacataagtgtttttacatgatccaaacaaatcaaaatactacattttgatcaaaatttagatcaac 18308580  T
Q  104 ta-tttggacaacattgcaatgaaataagatatcctaaataaacctagtaataatc 158  Q
     | |||||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  18308581 gattttggataacattgcaatgatataagatatcctaactaaacctagtaataatc 18308636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 17113255 - 17113592
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataat---tgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttag 97  Q
    |||||||  |||||| |||||||||||||  || || ||||||    ||||| ||||| ||| ||| ||||||  |||||||||||  || ||   ||||    
T  17113255 tttttgtgctcaatctaccacattgaatcctgaaatcacataacaagtgtttatacataatcaaagaaaatcaccatactacatttggattaacgtttag 17113354  T
Q  98 atcaac-tatttggacaacattgcaatgaaataagatatcctaaataaacctagtaataatcactttttcgaccaacaaaataaaaattagccatgaggg 196  Q
    |||||  |||||||| ||||   ||||||||||||||||||||| |||||||||||||   |||||||||||| ||      ||||| ||||| ||||||    
T  17113355 atcaaaatatttggataacaagacaatgaaataagatatcctaactaaacctagtaat---cactttttcgactaa------aaaaactagccttgaggg 17113445  T
Q  197 gatctaagcaagataatgcaacaaatgtcttcttggcttt-----------ttcatagcttctctggaaacaacaaaaatcttctagctgcaagtattta 285  Q
    |||||||||||| ||||||||||||  |||| |||||||            |||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  17113446 gatctaagcaagctaatgcaacaaaaatcttattggcttgcaacaacatcattcatagcttcatttgaatcaacaaaaatcttctagctgcaagtattta 17113545  T
Q  286 aaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    |||| ||||    ||||||||| |||||||||||||||||||||||||||    
T  17113546 aaaggaatg---aaacaaaaaccaaataaaagtaaatttgaggtataaat 17113592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 336
Target Start/End: Original strand, 18308690 - 18308863
Alignment:
Q  174 aaaataaaaattagccatgaggggatctaagcaagataatgcaacaaatgtcttcttggcttt-----------ttcatagcttctctggaaacaacaaa 262  Q
    |||| ||| ||||||||||||| |||||||||||| |||||||||| |  ||||||||||||            ||||||||||||||||| ||||||||    
T  18308690 aaaaaaaacattagccatgaggtgatctaagcaagctaatgcaacagaaatcttcttggcttgcaacaccatccttcatagcttctctggatacaacaaa 18308789  T
Q  263 aatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaatt 336  Q
    | ||||||||||||||||||||| ||  ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  18308790 agtcttctagctgcaagtatttagaatgaatgtgagatcaaaaactaaataaaaataaatttgaggtataaatt 18308863  T

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Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 31571345 - 31571496
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacattttcatcaaaacttagatc 100  Q
    |||||||| |||||||||||||||||||||||| ||||||||| |||    |||||||||||||||| ||||||||||| |||| ||||||| |||||||    
T  31571345 tttttgtactcaatccaccacattgaatctagaaattacataagtgt----acatgatccaagcaaagcaaaatactactttttgatcaaaatttagatc 31571440  T
Q  101 aacta-tttggacaacattgcaatgaaataagatatcctaaataaacctagtaata 155  Q
    ||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  31571441 aactattttggataacattacaatgaaataagatatcctaactaaacctagtaata 31571496  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38449752 - 38449696
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatga 57  Q
    |||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  38449752 tttttgtactcaatctaccacattgaatctagatattacataagtgtttttacatga 38449696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10869983 - 10870068
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataat---tgtttttacatgatccaagcaaatcaaaatactacattt 83  Q
    ||||||||||| ||||||||||||||||||||| || ||||||    | ||||||||  |||||||||||||| |||| |||||||    
T  10869983 tttttgtagtctatccaccacattgaatctagaaatcacataacaagtatttttacacaatccaagcaaatcacaatagtacattt 10870068  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 31571502 - 31571536
Alignment:
Q  291 aatgtgagaacaaaaacaaaataaaagtaaatttg 325  Q
    |||||||||||||||||||||||||||||||||||    
T  31571502 aatgtgagaacaaaaacaaaataaaagtaaatttg 31571536  T

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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 125 - 335
Target Start/End: Complemental strand, 26618795 - 26618575
Alignment:
Q  125 aaataagatatcctaaataaacctagtaataatcactttttcgaccaacaaaataaaaattagccatgaggggatctaagcaagataatgcaacaaatgt 224  Q
    ||||||||||||||    |||||||| ||||||||||||||| ||||| ||||||| || || ||||||||| ||||||||||| |||||||| |||  |    
T  26618795 aaataagatatcctcgccaaacctagcaataatcactttttccaccaa-aaaataataaataaccatgagggaatctaagcaagctaatgcaagaaaaat 26618697  T
Q  225 cttcttggctt-----------tttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaata 313  Q
     ||||||||||           |||||||| ||| || |||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  26618696 attcttggcttgcaacaccatctttcatagtttcacttgaaacaacaaaagtcttctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaata 26618597  T
Q  314 aaagtaaatttgaggtataaat 335  Q
    ||||||||||||||||||||||    
T  26618596 aaagtaaatttgaggtataaat 26618575  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 174 - 335
Target Start/End: Complemental strand, 26620711 - 26620539
Alignment:
Q  174 aaaataaaaattagccatgaggggatctaagcaagataatgcaacaaatgtcttcttggctt-----------tttcatagcttctctggaaacaacaaa 262  Q
    |||| ||| |||||||||||||||||||||| ||| ||||||||||||  ||||||||||||           ||||||||||||  | |||||||||||    
T  26620711 aaaaaaaacattagccatgaggggatctaagaaagctaatgcaacaaaaatcttcttggcttgcaacatcatctttcatagcttcatttgaaacaacaaa 26620612  T
Q  263 aatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    | ||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  26620611 agtcttctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaatcaaagtaaatttgaggtataaat 26620539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 26608107 - 26608019
Alignment:
Q  236 tttcatagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaattt 324  Q
    ||||||||||||  | |||||||||||| |||||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||    
T  26608107 tttcatagcttcatttgaaacaacaaaagtcttctagctgcaagtatgtagaaggaatgtgagagcaaaaacaaaataaaagtaaattt 26608019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26608335 - 26608253
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacataat---tgtttttacatgatccaagcaaatcaaaatactaca 80  Q
    ||||| || |||||||||||||||||||||| | |||||||||    || |||||||||||||||||||||||||||||||||    
T  26608335 tttttttactcaatccaccacattgaatctaaaaattacataacaagtgattttacatgatccaagcaaatcaaaatactaca 26608253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 26618865 - 26618795
Alignment:
Q  13 atccaccacattgaatctagagattacataat---tgtttttacatgatccaagcaaatcaaaatactaca 80  Q
    ||||||||||||||||||||| |||||||||    ||||||| ||| ||||||||||||||||||||||||    
T  26618865 atccaccacattgaatctagaaattacataacaagtgttttttcattatccaagcaaatcaaaatactaca 26618795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 26620785 - 26620738
Alignment:
Q  125 aaataagatatcctaaataaacctagtaataatcactttttcgaccaa 172  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  26620785 aaataagatatcctaactaaacctagtaataatcactttttccaccaa 26620738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 8248627 - 8248676
Alignment:
Q  256 caacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaa 305  Q
    ||||||| |||||||||||||||||||||| ||| |||||||||| ||||    
T  8248627 caacaaatatcttctagctgcaagtatttagaagtaatgtgagaataaaa 8248676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 26608253 - 26608212
Alignment:
Q  125 aaataagatatcctaaataaacctagtaataatcactttttc 166  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  26608253 aaataagatatcctaactaaacctagtaataatcattttttc 26608212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 26620858 - 26620785
Alignment:
Q  10 tcaatccaccacattgaatctagagattacataat---tgtttttacatgatccaagcaaatcaaaatactaca 80  Q
    |||| ||||||| ||||||||||| || ||||||    ||||||||||||||||||| ||| ||||||||||||    
T  26620858 tcaacccaccactttgaatctagaaatcacataacaagtgtttttacatgatccaaggaaaccaaaatactaca 26620785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 25338658 - 25338579
Alignment:
Q  256 caacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  25338658 caacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaagtaaaagtaaattgtaggtataaat 25338579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35083293 - 35083378
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacata---attgtttttacatgatccaagcaaatcaaaatactacattt 83  Q
    |||||||| |||||||||||||||||||||||| || |||||   | || |||||||| || |||| |||||| ||||||| ||||    
T  35083293 tttttgtactcaatccaccacattgaatctagaaatcacataacgagtgcttttacataattcaagtaaatcacaatactaaattt 35083378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 36035838 - 36035870
Alignment:
Q  58 tccaagcaaatcaaaatactacattttcatcaa 90  Q
    ||||||||||||||||||||||||||| |||||    
T  36035838 tccaagcaaatcaaaatactacattttgatcaa 36035870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 445806 - 445711
Alignment:
Q  240 atagcttctctggaaacaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    |||||||| || ||| |||||| ||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  445806 atagcttcacttgaagcaacaacaatcttctagctgcaagtatttagaaggaatgtaagcacaaaaacaaaataaaagtaaatttgaggtataaat 445711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 1943165 - 1943242
Alignment:
Q  256 caacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataa 333  Q
    ||||||| |||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  1943165 caacaaatatcttctagccgcaagtatttagaaggaatgtgagaacacaaacaaaataaaagtaaatttgaggtataa 1943242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 24631846 - 24631687
Alignment:
Q  183 attagccatgaggggatctaagcaagataatgcaacaaatgtcttcttggctt-----------tttcatagcttctctggaaacaacaaaaatcttcta 271  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||||| |||           |||| ||||||| || ||  |||||||| |||||||    
T  24631846 attagccatgaggggatctaagcaagctaatgcaacaaaaatcttcttgacttgcaacaccatgtttcgtagcttcacttgaggcaacaaaagtcttcta 24631747  T
Q  272 gctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaat 335  Q
    |||||||||||||||  | |||||||| |||||  |||| ||||||||||||||||||||||||    
T  24631746 gctgcaagtatttaa--ggaatgtgaggacaaa--caaattaaaagtaaatttgaggtataaat 24631687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 30129218 - 30129167
Alignment:
Q  261 aaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaat 312  Q
    ||||||||||||||||||||||||| ||| |||||||||  |||||||||||    
T  30129218 aaaatcttctagctgcaagtatttagaaggaatgtgagaggaaaaacaaaat 30129167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30129463 - 30129391
Alignment:
Q  1 tttttgtagtcaatccaccacattgaatctagagattacat---aattgtttttacatgatccaagcaaatca 70  Q
    ||||||||||||||||| ||||||||||||||| || ||||   || | ||||||||  ||||||||||||||    
T  30129463 tttttgtagtcaatccatcacattgaatctagaaatcacatcacaagtatttttacaaaatccaagcaaatca 30129391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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