View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8497_low_4 (Length: 330)
Name: NF8497_low_4
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8497_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 158 - 310
Target Start/End: Complemental strand, 15582388 - 15582236
Alignment:
| Q |
158 |
ggtgtttatctgaataaattatattttagataatatgactcaacaaataataatatctaagaggagaagacatggtaatgataatgatgatgttaaactt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15582388 |
ggtgtttatctgaataaattatattttagataatatgattcaacaaataataatatctaagaggagaagacatggtaatgataatgatgatgttaaactt |
15582289 |
T |
|
| Q |
258 |
agtgacttacctgattgcattctcatttacattatgtcttttttaaacactat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15582288 |
agtgacttacctgattgcattctcatttacattatgtcttttttaaacactat |
15582236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 15582522 - 15582457
Alignment:
| Q |
18 |
ttttgctccttatggctgtgttctattcatcaactgagtcatattggttggtatttttcattccccaaatg |
88 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15582522 |
ttttgctccttacggctgtgttc-----atcaactgagtcacattggttggtatttttcattccccaaatg |
15582457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University