View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8497_low_5 (Length: 325)

Name: NF8497_low_5
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8497_low_5
NF8497_low_5
[»] chr7 (24 HSPs)
chr7 (18-117)||(7116129-7116228)
chr7 (29-117)||(32788061-32788148)
chr7 (146-246)||(28015290-28015389)
chr7 (157-246)||(24470340-24470428)
chr7 (157-246)||(24475288-24475376)
chr7 (157-246)||(47749679-47749767)
chr7 (138-246)||(25855301-25855412)
chr7 (157-246)||(35141834-35141922)
chr7 (161-246)||(38649439-38649523)
chr7 (157-246)||(49166872-49166960)
chr7 (133-243)||(40775190-40775297)
chr7 (188-246)||(29804757-29804814)
chr7 (160-246)||(5025137-5025223)
chr7 (29-71)||(18712541-18712583)
chr7 (174-246)||(8611703-8611774)
chr7 (191-246)||(21329377-21329430)
chr7 (191-241)||(8319293-8319342)
chr7 (188-246)||(14734131-14734188)
chr7 (204-246)||(30992904-30992946)
chr7 (201-246)||(7985880-7985925)
chr7 (206-246)||(24045313-24045353)
chr7 (204-244)||(24988455-24988494)
chr7 (133-246)||(33530549-33530657)
chr7 (206-246)||(43807231-43807271)
[»] chr4 (30 HSPs)
chr4 (141-241)||(46729005-46729104)
chr4 (157-246)||(9661798-9661886)
chr4 (147-246)||(28588496-28588594)
chr4 (133-246)||(30416703-30416812)
chr4 (157-246)||(4634228-4634316)
chr4 (157-246)||(43156721-43156810)
chr4 (141-246)||(1657651-1657753)
chr4 (158-246)||(16991818-16991905)
chr4 (174-246)||(54420793-54420864)
chr4 (191-246)||(3673602-3673656)
chr4 (173-240)||(6408400-6408467)
chr4 (188-246)||(11817048-11817105)
chr4 (29-71)||(34446134-34446176)
chr4 (30-71)||(50313368-50313409)
chr4 (158-246)||(3168986-3169073)
chr4 (188-238)||(14542601-14542650)
chr4 (204-246)||(23067929-23067971)
chr4 (160-246)||(34115733-34115820)
chr4 (138-240)||(7242856-7242954)
chr4 (135-221)||(40859587-40859669)
chr4 (147-246)||(1646022-1646120)
chr4 (133-203)||(38434544-38434612)
chr4 (191-246)||(41486554-41486608)
chr4 (188-242)||(33021011-33021064)
chr4 (205-239)||(42972030-42972064)
chr4 (204-246)||(52555802-52555844)
chr4 (133-205)||(9474630-9474700)
chr4 (29-66)||(13479612-13479649)
chr4 (134-246)||(29577166-29577275)
chr4 (165-240)||(35338348-35338421)
[»] chr8 (21 HSPs)
chr8 (139-246)||(37658893-37658999)
chr8 (133-246)||(16937420-16937532)
chr8 (135-246)||(32256802-32256910)
chr8 (133-246)||(15665460-15665572)
chr8 (29-113)||(20495683-20495766)
chr8 (157-246)||(9269966-9270054)
chr8 (188-246)||(10042737-10042794)
chr8 (133-245)||(14115875-14115983)
chr8 (154-227)||(31713135-31713207)
chr8 (157-246)||(31874030-31874117)
chr8 (203-246)||(9992655-9992698)
chr8 (190-246)||(26937503-26937558)
chr8 (133-238)||(44295232-44295341)
chr8 (160-246)||(36545862-36545947)
chr8 (29-71)||(42774298-42774340)
chr8 (188-244)||(14327455-14327510)
chr8 (161-241)||(23766691-23766770)
chr8 (204-246)||(8054889-8054931)
chr8 (188-246)||(32061770-32061827)
chr8 (134-239)||(37719775-37719877)
chr8 (174-226)||(3680883-3680934)
[»] chr5 (17 HSPs)
chr5 (133-246)||(18472806-18472913)
chr5 (157-246)||(6887259-6887347)
chr5 (140-246)||(33486651-33486756)
chr5 (134-246)||(41554411-41554519)
chr5 (157-246)||(31645774-31645862)
chr5 (135-246)||(8812233-8812339)
chr5 (174-246)||(34893997-34894068)
chr5 (29-117)||(8595752-8595835)
chr5 (158-246)||(37424938-37425026)
chr5 (204-246)||(29310430-29310472)
chr5 (188-245)||(4070531-4070586)
chr5 (206-246)||(2415393-2415433)
chr5 (174-246)||(28618566-28618637)
chr5 (206-242)||(41358031-41358067)
chr5 (188-246)||(6647994-6648051)
chr5 (188-246)||(19646122-19646179)
chr5 (186-246)||(40565236-40565295)
[»] chr3 (27 HSPs)
chr3 (133-246)||(42106035-42106144)
chr3 (133-246)||(35501840-35501951)
chr3 (157-246)||(1165477-1165565)
chr3 (157-246)||(20201139-20201227)
chr3 (157-246)||(20203321-20203409)
chr3 (144-246)||(40462076-40462177)
chr3 (157-246)||(50519735-50519823)
chr3 (133-246)||(21803453-21803563)
chr3 (133-246)||(22843972-22844084)
chr3 (161-246)||(43029632-43029716)
chr3 (174-246)||(22286830-22286901)
chr3 (139-246)||(37051550-37051657)
chr3 (141-246)||(913399-913500)
chr3 (29-71)||(16899837-16899879)
chr3 (138-246)||(20251577-20251685)
chr3 (138-246)||(25374151-25374257)
chr3 (174-246)||(41882489-41882560)
chr3 (188-246)||(1806541-1806598)
chr3 (204-246)||(45664220-45664262)
chr3 (144-221)||(47914689-47914765)
chr3 (205-239)||(25939564-25939598)
chr3 (144-218)||(27056000-27056073)
chr3 (188-246)||(27831088-27831144)
chr3 (175-221)||(29776782-29776827)
chr3 (168-246)||(53426760-53426837)
chr3 (157-237)||(33978010-33978089)
chr3 (174-246)||(40796995-40797065)
[»] chr6 (13 HSPs)
chr6 (147-246)||(16913263-16913361)
chr6 (157-244)||(7049192-7049278)
chr6 (172-246)||(10744539-10744612)
chr6 (133-246)||(20844930-20845041)
chr6 (162-246)||(12576559-12576642)
chr6 (188-246)||(4663901-4663958)
chr6 (204-246)||(19759779-19759821)
chr6 (175-246)||(32457609-32457679)
chr6 (29-71)||(4868129-4868171)
chr6 (160-241)||(27575113-27575193)
chr6 (205-246)||(32804286-32804327)
chr6 (133-240)||(8644166-8644272)
chr6 (204-240)||(13234194-13234230)
[»] chr2 (34 HSPs)
chr2 (157-246)||(3390377-3390465)
chr2 (157-246)||(25771390-25771478)
chr2 (162-246)||(10588988-10589071)
chr2 (134-246)||(37883577-37883686)
chr2 (133-246)||(3602908-3603018)
chr2 (141-246)||(19581084-19581188)
chr2 (157-246)||(25516439-25516527)
chr2 (161-246)||(27024220-27024304)
chr2 (157-246)||(40125334-40125422)
chr2 (154-227)||(4878795-4878867)
chr2 (157-246)||(41176807-41176895)
chr2 (133-221)||(24500443-24500530)
chr2 (174-246)||(27191416-27191487)
chr2 (174-246)||(27841230-27841301)
chr2 (174-246)||(44167790-44167861)
chr2 (157-240)||(3464904-3464986)
chr2 (147-246)||(29812696-29812794)
chr2 (188-246)||(6089869-6089926)
chr2 (204-246)||(7640437-7640479)
chr2 (188-246)||(42105833-42105890)
chr2 (157-239)||(44441331-44441412)
chr2 (161-246)||(5930372-5930456)
chr2 (204-246)||(15674055-15674097)
chr2 (175-241)||(43566840-43566904)
chr2 (163-243)||(41841900-41841980)
chr2 (174-238)||(9715634-9715697)
chr2 (157-241)||(34479901-34479984)
chr2 (48-117)||(234804-234869)
chr2 (188-246)||(3398060-3398119)
chr2 (174-245)||(36507893-36507963)
chr2 (189-243)||(26491280-26491333)
chr2 (167-221)||(44951457-44951510)
chr2 (147-228)||(16720916-16720996)
chr2 (204-245)||(16880041-16880082)
[»] chr1 (17 HSPs)
chr1 (134-246)||(22344993-22345102)
chr1 (133-240)||(44514077-44514183)
chr1 (143-246)||(52839353-52839456)
chr1 (188-246)||(13691839-13691897)
chr1 (133-229)||(14717340-14717433)
chr1 (147-242)||(30853868-30853962)
chr1 (205-246)||(44562830-44562871)
chr1 (188-246)||(22032170-22032228)
chr1 (48-117)||(52398586-52398651)
chr1 (204-246)||(5832224-5832266)
chr1 (29-71)||(23893796-23893838)
chr1 (157-238)||(27469821-27469901)
chr1 (174-246)||(6212967-6213038)
chr1 (174-242)||(33703594-33703661)
chr1 (157-241)||(38646529-38646612)
chr1 (204-246)||(630866-630908)
chr1 (188-246)||(52839497-52839554)
[»] scaffold0045 (1 HSPs)
scaffold0045 (157-246)||(9729-9817)
[»] scaffold0665 (1 HSPs)
scaffold0665 (133-245)||(1174-1282)
[»] scaffold0011 (1 HSPs)
scaffold0011 (157-246)||(10964-11052)
[»] scaffold1294 (1 HSPs)
scaffold1294 (157-238)||(725-805)
[»] scaffold0018 (1 HSPs)
scaffold0018 (158-206)||(137179-137226)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 7116228 - 7116129
Alignment:
Q  18 gtttagaagttaattaaggattattaattgtttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaacatata 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7116228 gtttagaagttaattaaagattattaattgtttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaacatata 7116129  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 32788061 - 32788148
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaacatata 117  Q
    |||||| ||||||||||  |||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||||    
T  32788061 aattaaagattattaatgttttttagtattaaatactgttataaaactatat-atttaataattactattaatataaatgaaacatata 32788148  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 28015290 - 28015389
Alignment:
Q  146 ctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctct 245  Q
    |||||| || ||||||| ||||||||  ||| ||||||||| ||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  28015290 ctctctcttgggagccgccaccaaaaccctaattttttcaccttcatccactaaagagggg-tgatttagggtcaatttttgatccaaaatcacccctct 28015388  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 24470340 - 24470428
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||  |||  ||||||| ||| | ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  24470340 gagccgtcacacaaaccctagtttcttctccttcatccaccaaagagggg-tgatttaggggcaatttttgacccaaaatcacccctcta 24470428  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 24475288 - 24475376
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||  |||  ||||||| ||| | ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  24475288 gagccgtcacacaaaccctagtttcttctccttcatccaccaaagagggg-tgatttaggggcaatttttgacccaaaatcacccctcta 24475376  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 47749679 - 47749767
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||| ||||  ||| ||| ||| | ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  47749679 gagccgtcacgaaaaccctaatttcttctccttcatccaccaaagagggg-tgatttatggtcaatttttgacccaaaatcacccctcta 47749767  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 25855412 - 25855301
Alignment:
Q  138 ttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggg---gtgatttagggtcaagttttgacccaaa 234  Q
    ||||| |||||||| ||  |||| |||||| |||   |||||||||| | |||||||||||||||||||   ||||||||||||||| |||||| |||||    
T  25855412 ttccctttctctctcttgcgagctgtcaccgaaaccttagttttttctccttcatccaccaaagaggggtgggtgatttagggtcaatttttgatccaaa 25855313  T
Q  235 atcacccctcta 246  Q
    |||| |||||||    
T  25855312 atcatccctcta 25855301  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 35141922 - 35141834
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||  |||||| ||| | ||||| ||||||||| ||| |||||||||||||| |||||||| |||||||||| ||||    
T  35141922 gagccgtcaccaaaatcatagtttattctccttcattcaccaaagaaggg-tgatttagggtcaatttttgaccaaaaatcacccttcta 35141834  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 38649523 - 38649439
Alignment:
Q  161 cgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||| ||| ||| ||||| |||||| || ||| ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  38649523 cgtcaccaaaatcctaatttcttcaccttcatcaactaaaaagggg-tgatttagagtcaatttttgacccaaaatcacccctcta 38649439  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 49166872 - 49166960
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||  |||  ||||||| ||| | ||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||    
T  49166872 gagccgtcacacaaaccctagtttcttctccttcatccaccaaagatggg-tgatttagggtcaatttttgacctaaaatcacccctcta 49166960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 40775190 - 40775297
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| ||||||||| |  ||| |||||||||||  ||| ||| ||| | |||||||| |||||||||| |||||||||||||| |||||| |||    
T  40775190 ctcttttccctttctctcttgt--gagtcgtcaccaaaaccctaatttcttctccttcatccatcaaagagggg-tgatttagggtcaatttttgatcca 40775286  T
Q  233 aaatcacccct 243  Q
    |||||||||||    
T  40775287 aaatcacccct 40775297  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 29804814 - 29804757
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||    
T  29804814 ttcatccaccaaagagggg-tggtttagggtcaatttttgaccccaaatcacccctcta 29804757  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 5025223 - 5025137
Alignment:
Q  160 ccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagtttt-gacccaaaatcacccctcta 246  Q
    ||||||||||||  ||||||| ||||  ||||||||||| ||||||| |||||| | ||||| |||| ||||||||||||||||||||    
T  5025223 ccgtcaccaaaaccctagtttcttcatcttcatccaccagagagggg-tgattttgagtcaattttttgacccaaaatcacccctcta 5025137  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 18712541 - 18712583
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattata 71  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  18712541 aattaaagattattaattgtttgtagtattaaatactattata 18712583  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 8611774 - 8611703
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||||| ||||||||| ||||||||||||   ||||||||||| ||||||||||||    
T  8611774 ctagtttcttctccttcatccacgaaagagggg-tgatttagggtctctttttgacccaatatcacccctcta 8611703  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 21329430 - 21329377
Alignment:
Q  191 atccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||    
T  21329430 atccaccaaagagggg-tggtttagggtcaatttttgaccc-aaatcacccctcta 21329377  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 8319293 - 8319342
Alignment:
Q  191 atccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    |||||||||||||| | ||||||| |||||| |||||||||||||||||||    
T  8319293 atccaccaaagaggag-tgatttatggtcaacttttgacccaaaatcaccc 8319342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 14734188 - 14734131
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||| |||||| ||| || ||||||||||| ||||||||| ||||||||||||||    
T  14734188 ttcatccatcaaagaaggg-tggtttagggtcaatttttgaccccaaatcacccctcta 14734131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 30992946 - 30992904
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||| ||| || ||||||||||||||||||||||||    
T  30992946 ggggtgatttaaggttaatttttgacccaaaatcacccctcta 30992904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 7985880 - 7985925
Alignment:
Q  201 gagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||||| |||||||| |||| || |||||||    
T  7985880 gagggggtgatttagggtcaacttttgacctaaaaccatccctcta 7985925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 24045353 - 24045313
Alignment:
Q  206 ggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||| |||||| ||||||||||||||||||| ||||    
T  24045353 ggtgatttaaggtcaatttttgacccaaaatcacccgtcta 24045313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 24988494 - 24988455
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctc 244  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  24988494 ggggtgattcagggtcaa-ttttgacccaaaatcacccctc 24988455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 33530657 - 33530549
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttt-tttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccc 231  Q
    |||||||| ||||||||||| |  ||||| |||||||||   |||||| ||| |||| |||| | |||||||||| ||||||||||||||  ||||||||    
T  33530657 ctctcttctccttctctcttgt--gagccatcaccaaaaccatagtttcttttactt-catctatcaaagagggg-tgatttagggtcaa--tttgaccc 33530564  T
Q  232 aaaatcacccctcta 246  Q
    |||| ||||||||||    
T  33530563 aaaaccacccctcta 33530549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 43807271 - 43807231
Alignment:
Q  206 ggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  43807271 ggtgatttatggtcaatttttgacccaaaatcacctctcta 43807231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 46729104 - 46729005
Alignment:
Q  141 cccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  46729104 cccttctctctttttggagccgtcatcaaaactctagttttttcactttcatccaccaaaga-ggggtgatttagggtcaatttttgacccaaaatcacc 46729006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 9661798 - 9661886
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| | |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  9661798 gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 9661886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 28588496 - 28588594
Alignment:
Q  147 tctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||  |||||||||||||||| ||||||| ||| | |||||||| || ||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  28588496 tctcttttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcatagaaggg-tgatttagggtcaatttttgacccaaaatcacccctcta 28588594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 30416812 - 30416703
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||| ||||  ||||||||||||| | ||||| ||||| |||||| |||||| |||    
T  30416812 ctctcttccccttctct---tttggagccgttaccaaaattctagtttcttcatcttcatccaccaaa-aaggggtaatttatggtcaatttttgaacca 30416717  T
Q  233 aaatcacccctcta 246  Q
    ||||||| ||||||    
T  30416716 aaatcacacctcta 30416703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 4634228 - 4634316
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| | |||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  4634228 gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttaaggtcaatttttgacccaaaatcacccctcta 4634316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 43156721 - 43156810
Alignment:
Q  157 gagccgtcaccaaaattctagtttt-ttcactttcatccaccaaagagggggtgattta-gggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||| | ||||||| ||| | ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  43156721 gagccgtcaccaaaact-tagttttcttctccttcatccaccaaagagggg-tgatttacgggtcaatttttgacccaaaatcacccctcta 43156810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 1657753 - 1657651
Alignment:
Q  141 cccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    |||||||||||| |  ||| |||||| ||||  ||||||| ||| | |||||||| ||||||| || |||||||||||||| ||||||||||||||||||    
T  1657753 cccttctctcttgt--gagacgtcactaaaaccctagtttcttctccttcatccatcaaagagagg-tgatttagggtcaatttttgacccaaaatcacc 1657657  T
Q  241 cctcta 246  Q
    ||||||    
T  1657656 cctcta 1657651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 16991818 - 16991905
Alignment:
Q  158 agccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||| |||||||  ||||||| ||| | |||||||| ||||||| || |||||||||||||| ||||||||||||||||||| ||||    
T  16991818 agccgttaccaaaaccctagtttcttctccttcatccatcaaagagcgg-tgatttagggtcaatttttgacccaaaatcacccatcta 16991905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 54420864 - 54420793
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||    
T  54420864 ctagtttcttctccttcatccaccaaagatggg-tgatttagggtcaatttttgacccaaaatcactcctcta 54420793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 3673602 - 3673656
Alignment:
Q  191 atccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  3673602 atccaccaaagagggg-tgatttagggtcaatttttgaccccaaatcacccctcta 3673656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 6408400 - 6408467
Alignment:
Q  173 tctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    |||||||| ||| | ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||    
T  6408400 tctagtttcttctccttcatccaccaaagaggaggtgattaagggtcaattttttacccaaaatcacc 6408467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 11817048 - 11817105
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||    
T  11817048 ttcatccatcaaagagggg-tggtttagggttaagttttgacccaaaatcacccctcta 11817105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 34446134 - 34446176
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattata 71  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  34446134 aattaaagattattaattgtttttagtattaaatactattata 34446176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 50313409 - 50313368
Alignment:
Q  30 attaaggattattaattgtttttagtattaaatactattata 71  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  50313409 attaaagattattaattgtttttagtattaaatactattata 50313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 3168986 - 3169073
Alignment:
Q  158 agccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||| || |||| ||||||||||||   ||||| |||||||||| || |||||||| ||||| | ||||||||||||||||||||||    
T  3168986 agccgtgactaaaactctagttttttcttcttcattcaccaaagagagg-tgatttagagtcaattattgacccaaaatcacccctcta 3169073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 14542650 - 14542601
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatca 238  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  14542650 ttcatccatcaaagagggg-tgatttagggtcaatttttgacccaaaatca 14542601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 23067971 - 23067929
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  23067971 ggggtgatttagggtcaatttttgaccctaaatcacccctcta 23067929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 34115820 - 34115733
Alignment:
Q  160 ccgtcaccaaaattctagttttt--tcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||| || |||||  || | |||||| ||||||||| |  | |||||||||||| ||||||||||||||||||||||||    
T  34115820 ccgtcaccaaaattttaatttttcttctcattcatctaccaaagagaga-taatttagggtcaatttttgacccaaaatcacccctcta 34115733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 7242954 - 7242856
Alignment:
Q  138 ttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatc 237  Q
    ||||| |||||||| ||  ||||| |||||||||  ||||||| |||   || |||||||||| |||||  ||||||||||||| |||||||||||||||    
T  7242954 ttccctttctctctcttgtgagccatcaccaaaaccctagtttcttc---tttatccaccaaaaaggggc-gatttagggtcaatttttgacccaaaatc 7242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 40859587 - 40859669
Alignment:
Q  135 ctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaa 221  Q
    |||||| |||||||||||   | ||||||||||||||  ||||||| |||   ||||||||||||||| ||||||||||||||||||    
T  40859587 ctcttctccttctctctt---gaagccgtcaccaaaaccctagtttcttcgtcttcatccaccaaaga-ggggtgatttagggtcaa 40859669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 1646120 - 1646022
Alignment:
Q  147 tctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||| ||| |||||||||| ||||  ||||||| |||   ||||| |||||||||| |  ||||||||||| || | ||||||||||||||||||||||    
T  1646120 tctctcttttgagccgtcactaaaaccctagtttcttcttcttcattcaccaaagagaga-tgatttagggttaattgttgacccaaaatcacccctcta 1646022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 38434544 - 38434612
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagag 203  Q
    ||||||||||||| |||||| |  |||||||||||||||| ||| ||||||  | ||||||||||||||||    
T  38434544 ctctcttccccttatctcttgt--gagccgtcaccaaaatcctaattttttatccttcatccaccaaagag 38434612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 41486554 - 41486608
Alignment:
Q  191 atccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||| |||||||||| | |||||||||||| |||||| |||||||||||||||||    
T  41486554 atccatcaaagaggggtt-atttagggtcaatttttgatccaaaatcacccctcta 41486608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 33021064 - 33021011
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccc 242  Q
    ||||||||||||||| |||||| ||| ||||||| ||||||||| ||||||||||    
T  33021064 ttcatccaccaaaga-ggggtggttttgggtcaaattttgaccccaaatcacccc 33021011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 42972030 - 42972064
Alignment:
Q  205 gggtgatttagggtcaagttttgacccaaaatcac 239  Q
    ||||||||||||||||| |||||||||||||||||    
T  42972030 gggtgatttagggtcaatttttgacccaaaatcac 42972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 52555844 - 52555802
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||| ||| |||||||||||||||||| |||||    
T  52555844 ggggtgatttagggacaatttttgacccaaaatcacctctcta 52555802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 9474700 - 9474630
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagaggg 205  Q
    |||| ||||||||||||||| |  |||||||||||||||  ||||||| ||| | |||||| |||||||||||    
T  9474700 ctcttttccccttctctcttgt--gagccgtcaccaaaaccctagtttcttctccttcatcaaccaaagaggg 9474630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 13479649 - 13479612
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatacta 66  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  13479649 aattaaagattattaactgtttttagtattaaatacta 13479612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 29577275 - 29577166
Alignment:
Q  134 tctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaa 233  Q
    ||||||| ||||||||||| |  |||||||||||||||| ||| ||| ||  | ||||||||  ||| ||||| |||||||||||||  ||||||| |||    
T  29577275 tctcttctccttctctcttgt--gagccgtcaccaaaatcctaatttattttccttcatccataaaaaagggg-tgatttagggtcactttttgactcaa 29577179  T
Q  234 aatcacccctcta 246  Q
    |||  ||||||||    
T  29577178 aatatcccctcta 29577166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 35338348 - 35338421
Alignment:
Q  165 accaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    |||||||| ||| ||||||| | |||||| |||||||| |   |||||||||||||| ||||||||| ||||||||    
T  35338348 accaaaatcctaattttttctccttcatctaccaaagatga--tgatttagggtcaaattttgaccctaaatcacc 35338421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 37658893 - 37658999
Alignment:
Q  139 tccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatca 238  Q
    ||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  37658893 tccccttctctctttttggagccatcaccaaaaccctaattttttcactttcatccaccaaaga-ggggtgatttagggtcaatttttgacacaaaatca 37658991  T
Q  239 cccctcta 246  Q
    ||||||||    
T  37658992 cccctcta 37658999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 16937532 - 16937420
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||||||||||||||||||| | |||||||||| |||||  ||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||| |||    
T  16937532 ctctcttccccttctctcttctgggagccgtcatcaaaaccctagtttcttcaccttcatccaccaaaga-ggggtgatttagggtcaatttttgatcca 16937434  T
Q  233 aaatcacccctcta 246  Q
    |||||| |||||||    
T  16937433 aaatcatccctcta 16937420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 32256910 - 32256802
Alignment:
Q  135 ctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaa-gttttgacccaa 233  Q
    ||||||||||||||||||   |||||||||| |||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  32256910 ctcttccccttctctctt---ggagccgtcatcaaaatcctagttttttcatcttcatccaccaaaga-ggggtgatttagggtcaatttttttacccaa 32256815  T
Q  234 aatcacccctcta 246  Q
    |||||||||||||    
T  32256814 aatcacccctcta 32256802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 15665460 - 15665572
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||||||| ||||||||||| |   |||||||||||||| |||||||| ||  | |||||||| |||||||||| |||||||||||||| ||||||| ||    
T  15665460 ctctcttctccttctctcttgtgtaagccgtcaccaaaactctagtttctttcccttcatccaacaaagagggg-tgatttagggtcaacttttgacaca 15665558  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  15665559 aaatcacccctcta 15665572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 20495766 - 20495683
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaaca 113  Q
    |||||| ||| | ||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||    
T  20495766 aattaaagatgaataattgtttttagtattaaatactattattaaacaatgt-atttaataattagtatcaatataaatgaaaca 20495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 9269966 - 9270054
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||| |||| |||||||| ||| | ||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||    
T  9269966 gagccgtcacgaaaactctagtttcttctccttcatccaccaaagagggg-tgatttatgatcaatttttgacccaaaatcacccctcta 9270054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 10042737 - 10042794
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  10042737 ttcatccaccaaagagggg-tgatttatggtcaatttttgacccaaaatcacccctcta 10042794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 14115983 - 14115875
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| ||||||||| |  ||||||||||| ||| |||||||  ||| |||||||||||||||||  |||||||||| |||||| ||||||||||    
T  14115983 ctcttttccctttctctcttgt--gagccgtcacctaaactctagttacttctctttcatccaccaaaga-tgggtgattta-ggtcaatttttgaccca 14115888  T
Q  233 aaatcacccctct 245  Q
    |||||| ||||||    
T  14115887 aaatcatccctct 14115875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 31713207 - 31713135
Alignment:
Q  154 ttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttg 227  Q
    |||||||||||||||||| |||||||| ||||| |||| ||| |||||| |||||||||||||||||| |||||    
T  31713207 ttggagccgtcaccaaaactctagtttcttcaccttcacccatcaaaga-ggggtgatttagggtcaacttttg 31713135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 31874030 - 31874117
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||   ||||||| ||| | |||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  31874030 gagccgtcaccaaacc-ctagtttcttctccttcatccatcaaagagagg-tgatttagggtcaatttttgacccaaaatcacccctcta 31874117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 9992655 - 9992698
Alignment:
Q  203 gggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  9992655 gggggtgatttagggtcaatttttgacccaaaatcacccctcta 9992698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 26937503 - 26937558
Alignment:
Q  190 catccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||    
T  26937503 catccaccaaagaggggtt-atttagggttaagttttgactcaaaatcacccctcta 26937558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 44295232 - 44295341
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcact-------ttcatccaccaaagagggggtgatttagggtcaagttt 225  Q
    |||||||||||||||||||  |  |||||||||||||||  ||||||| ||| ||       |||||||| |||||||||| |||||||||||||| |||    
T  44295232 ctctcttccccttctctctagt--gagccgtcaccaaaaccctagtttcttctctcttctccttcatccatcaaagagggg-tgatttagggtcaatttt 44295328  T
Q  226 tgacccaaaatca 238  Q
    |||||||||||||    
T  44295329 tgacccaaaatca 44295341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 36545947 - 36545862
Alignment:
Q  160 ccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||  |||| ||||||| ||| | ||||||||||||||||||  ||||||| |||||| || |||||||| ||||||||||||    
T  36545947 ccgtcactgaaatcctagtttcttctccttcatccaccaaagaggga-tgatttaaggtcaatttgtgacccaatatcacccctcta 36545862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 42774298 - 42774340
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattata 71  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  42774298 aattaaagatcattaattgtttttagtattaaatactattata 42774340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 14327455 - 14327510
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctc 244  Q
    ||||||||||||||||||| || ||||||||||| ||||||||| || |||||||||    
T  14327455 ttcatccaccaaagagggg-tggtttagggtcaatttttgaccccaattcacccctc 14327510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 23766691 - 23766770
Alignment:
Q  161 cgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    |||||| |||| |||||||| |||   ||||||||||||||||  | ||||||| |||||| |||||||||||||||||||    
T  23766691 cgtcacaaaaactctagtttcttctacttcatccaccaaagagatg-tgatttaaggtcaatttttgacccaaaatcaccc 23766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 8054931 - 8054889
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| |||||||||||||| | |||||||    
T  8054931 ggggtgatttagggtcaatttttgacccaaaattatccctcta 8054889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 32061770 - 32061827
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||||  | ||||||||||| ||||||||| ||||||||| ||||    
T  32061770 ttcatccaccaaagaggggtag-tttagggtcaatttttgaccccaaatcacccttcta 32061827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 37719775 - 37719877
Alignment:
Q  134 tctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaa 233  Q
    |||||||||||| |||||| |  |||||||| | ||||  ||||||| ||| | |||||||||||| || ||| |||||||||||||| |||||| | ||    
T  37719775 tctcttccccttttctcttgt--gagccgtctctaaaaccctagtttcttctccttcatccaccaaggacggg-tgatttagggtcaatttttgaactaa 37719871  T
Q  234 aatcac 239  Q
    ||||||    
T  37719872 aatcac 37719877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 3680883 - 3680934
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagtttt 226  Q
    ||||||| ||| ||||||||||||||||| |||||||||||| ||||| ||||    
T  3680883 ctagtttcttctctttcatccaccaaaga-ggggtgatttagagtcaattttt 3680934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 18472913 - 18472806
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    ||||||||||||||||||||   |||||||||||||||| |||||||| ||||| |||||||||||||||||    ||||||||||||| ||||||||||    
T  18472913 ctctcttccccttctctcttg--ggagccgtcaccaaaactctagtttcttcaccttcatccaccaaagagg----gatttagggtcaatttttgaccca 18472820  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  18472819 aaatcacccctcta 18472806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 6887347 - 6887259
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||| |||||||| ||| | |||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  6887347 gagccgtcaccaaaactctagtttcttctccttcatccatcaaagagggg-tgatttagggtcaatttttaacccaaaatcacccctcta 6887259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 33486756 - 33486651
Alignment:
Q  140 ccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcac 239  Q
    |||||| ||||| || ||||||||||||||||   || ||| ||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  33486756 ccccttttctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaagagggg-tgatttagggtcaatttttgacccaaaatcac 33486658  T
Q  240 ccctcta 246  Q
    || ||||    
T  33486657 ccatcta 33486651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 41554411 - 41554519
Alignment:
Q  134 tctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaa 233  Q
    ||||||||||||||||||    ||||| ||||||||||| ||| ||| ||||| ||||| || |||||||||| ||||||||| |||| |||||| ||||    
T  41554411 tctcttccccttctctctc---ggagctgtcaccaaaatcctaatttcttcaccttcattcatcaaagagggg-tgatttaggatcaatttttgatccaa 41554506  T
Q  234 aatcacccctcta 246  Q
    |||||||||||||    
T  41554507 aatcacccctcta 41554519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 31645774 - 31645862
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| | ||||||||  ||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  31645774 gagccgtcaccaaaaccctagtttcttctccttcatccattaaagagggg-tgatttagggtcaatttttgatccaaaatcacccctcta 31645862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 8812339 - 8812233
Alignment:
Q  135 ctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaa 234  Q
    ||||||||||||||||||   | |||| |||| |||| |||||||| ||||  ||||||||||||| ||||| |||| ||||||||| |||| |||||||    
T  8812339 ctcttccccttctctctt---gaagcc-tcacaaaaactctagtttcttcatcttcatccaccaaaaagggg-tgatatagggtcaatttttaacccaaa 8812245  T
Q  235 atcacccctcta 246  Q
    ||||||||||||    
T  8812244 atcacccctcta 8812233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 34894068 - 34893997
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | |||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  34894068 ctagtttcttctccttcatccatcaaagagggg-tgatttacggtcaatttttgacccaaaatcacccctcta 34893997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 8595835 - 8595752
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaacatata 117  Q
    |||||| ||| ||||||| |||||||||||||| |||| |||||||   |||| |||||||||||||||||||||||||||| ||||||    
T  8595835 aattaaagatgattaatt-tttttagtattaaaaactactataaaa---tgta-tttaataattactatcaatataaatgaagcatata 8595752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 37424938 - 37425026
Alignment:
Q  158 agccgtcaccaaaattctagtttt-ttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||  |||||||| ||  | ||||||||||||||||||| ||||||| |||||| || |||||||||||||| ||||||    
T  37424938 agccgtcaccaaaaccctagttttcttttccttcatccaccaaagagggg-tgatttatggtcaatttctgacccaaaatcacgcctcta 37425026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 29310472 - 29310430
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  29310472 ggggtgatttagggtcaatttttgatccaaaatcacccctcta 29310430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 4070531 - 4070586
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctct 245  Q
    ||||||||||||| ||||| |||||||||||||  |||||||||||||||||||||||    
T  4070531 ttcatccaccaaaaagggg-tgatttagggtcat-ttttgacccaaaatcacccctct 4070586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 2415393 - 2415433
Alignment:
Q  206 ggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcacccttcta 2415433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 28618566 - 28618637
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||  ||||||||||| ||||||| |||||| |||| |||||||||||||||||||    
T  28618566 ctagtttcttctccttcatcagccaaagagggg-tgatttaaggtcaatttttaacccaaaatcacccctcta 28618637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 41358031 - 41358067
Alignment:
Q  206 ggtgatttagggtcaagttttgacccaaaatcacccc 242  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41358031 ggtgatttagggtcaatttttgacccaaaatcacccc 41358067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 6648051 - 6647994
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||| ||||||||||  |||||| |||||| ||||||||||||||||| ||||||    
T  6648051 ttcatccatcaaagaggggc-gatttatggtcaaattttgacccaaaatcactcctcta 6647994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 19646179 - 19646122
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||| |||||||||||| || |||| ||||||  |||||||||||||||||||||||    
T  19646179 ttcatcgaccaaagagggg-tggtttaaggtcaatgtttgacccaaaatcacccctcta 19646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 40565295 - 40565236
Alignment:
Q  186 ctttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||| |||||| ||||||||  | ||||||||| |||||||| |||||    
T  40565295 ctttcatccaccaaaga-ggggtggtttagggttgatttttgaccccaaatcacctctcta 40565236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 42106035 - 42106144
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    ||||||||||||||||||||   ||||||||||||||||  ||||||| ||||  ||||||||||||||| |||||||||||||||||| |||||||| |    
T  42106035 ctctcttccccttctctctt---ggagccgtcaccaaaaccctagtttcttcatcttcatccaccaaaga-ggggtgatttagggtcaatttttgaccta 42106130  T
Q  233 aaatcacccctcta 246  Q
    ||||||||| ||||    
T  42106131 aaatcacccatcta 42106144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 35501951 - 35501840
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| |||||||| ||  ||||||||||| |||| ||||||| ||| | ||||||||||||||||||  ||||||||||| || ||||||||||    
T  35501951 ctcttttccctttctctctcttgtgagccgtcaccgaaatcctagtttcttctccttcatccaccaaagaggg--tgatttagggttaatttttgaccca 35501854  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  35501853 aaatcacccctcta 35501840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 1165565 - 1165477
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| | |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1165565 gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 1165477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 20201227 - 20201139
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||| ||||  ||||||| ||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  20201227 gagccgtcacgaaaaccctagtttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 20201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 20203409 - 20203321
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||| ||||  ||||||| ||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  20203409 gagccgtcacgaaaaccctagtttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 20203321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 40462177 - 40462076
Alignment:
Q  144 ttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccct 243  Q
    |||||||||||  ||| |||| ||||||  ||||||| ||| |||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||    
T  40462177 ttctctcttttgtgagacgtcgccaaaaccctagtttcttctctttcatccaccaaagagtgg-tgatttagagtcaaattttgacccaaaatcacccct 40462079  T
Q  244 cta 246  Q
    |||    
T  40462078 cta 40462076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 50519735 - 50519823
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||  |||  ||||||| ||| | ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  50519735 gagccgtcacacaaaccctagtttcttctccttcatccaccaaagatggg-tgatttagggtcaatttttgacccaaaatcacccctcta 50519823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 21803453 - 21803563
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| ||||||||| |  |||||||||||||||  ||||||| ||| | |||||| |||||||||| | ||||| || ||||| ||||||||||    
T  21803453 ctcttttccctttctctcttgt--gagccgtcaccaaaaccctagtttcttctccttcatctaccaaagaggag-tgattcagtgtcaatttttgaccca 21803549  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  21803550 aaatcacccctcta 21803563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 22843972 - 22844084
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    ||||||||||||||| | | ||  || ||||||||||||  ||||||| ||| | ||||| || |||||||||  ||||||| |||||| ||||||||||    
T  22843972 ctctcttccccttctatttcttgtgaaccgtcaccaaaaccctagtttattctccttcattcatcaaagagggc-tgatttaaggtcaatttttgaccca 22844070  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  22844071 aaatcacccctcta 22844084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 43029632 - 43029716
Alignment:
Q  161 cgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||  ||||||| ||| | |||||||| |||||||||| ||||||||| |||  ||||||||||||||||||||||||    
T  43029632 cgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttaggatcattttttgacccaaaatcacccctcta 43029716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 22286901 - 22286830
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||    
T  22286901 ctagtttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttgacctaaaattacccctcta 22286830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 37051550 - 37051657
Alignment:
Q  139 tccccttctctctttttggagccgtca-ccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatc 237  Q
    ||||| ||||||||||  ||||||||  || ||| |||| ||| ||| ||||||||||||||||||||  |||||||||||||| |||||||||  ||||    
T  37051550 tccccctctctcttttgtgagccgtcggccgaaactctaatttcttctctttcatccaccaaagaggga-tgatttagggtcaatttttgaccctgaatc 37051648  T
Q  238 acccctcta 246  Q
    |||||||||    
T  37051649 acccctcta 37051657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 913500 - 913399
Alignment:
Q  141 cccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    |||||||||||||   |||||||||||||||   |||||| ||||  ||||||||||||||||||| | ||| |  ||||| ||||||||||||||||||    
T  913500 cccttctctcttt---gagccgtcaccaaaaccttagtttcttcatcttcatccaccaaagagggg-taattcatagtcaatttttgacccaaaatcacc 913405  T
Q  241 cctcta 246  Q
    ||||||    
T  913404 cctcta 913399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 16899837 - 16899879
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattata 71  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  16899837 aattaaagattattaattgtttttagtattaaatactattata 16899879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 20251577 - 20251685
Alignment:
Q  138 ttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtc-aagttttgacccaaaat 236  Q
    ||||| |||||||| ||  ||||||||||| |||  ||||||| ||| | ||||||||||||||| |||||||||||||||| |  |||| |||||||||    
T  20251577 ttccctttctctctcttgtgagccgtcaccgaaaccctagtttattctccttcatccaccaaaga-ggggtgatttagggtcgatttttttacccaaaat 20251675  T
Q  237 cacccctcta 246  Q
    ||||| ||||    
T  20251676 cacccttcta 20251685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 25374257 - 25374151
Alignment:
Q  138 ttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatc 237  Q
    ||||| |||||||||||  |||||||||| |||| |||||||| ||  | ||||| || ||||||  |||||||||||||| || |||||||| ||||||    
T  25374257 ttccctttctctcttttgtgagccgtcactaaaactctagtttcttttccttcattca-caaaga-agggtgatttagggttaatttttgacctaaaatc 25374160  T
Q  238 acccctcta 246  Q
    |||||||||    
T  25374159 acccctcta 25374151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 41882560 - 41882489
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | |||||||| |||||||| | |||||||||||||| |||||||||||||| |||||||||    
T  41882560 ctagtttcttctccttcatccatcaaagaggag-tgatttagggtcaatttttgacccaaaattacccctcta 41882489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 1806598 - 1806541
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||| || ||||||||||| |||||| || ||||||||||||||    
T  1806598 ttcatccaccaaagagggg-tggtttagggtcaatttttgatcccaaatcacccctcta 1806541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 45664220 - 45664262
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  45664220 ggggtgatttaggatcaaattttgacccaaaatcacccctcta 45664262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 47914765 - 47914689
Alignment:
Q  144 ttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaa 221  Q
    |||||||||||  ||||||||||  |||| ||| ||| ||| | ||||||||||||||| ||||||||||||||||||    
T  47914765 ttctctcttttgtgagccgtcacagaaatcctaatttcttctccttcatccaccaaaga-ggggtgatttagggtcaa 47914689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 25939598 - 25939564
Alignment:
Q  205 gggtgatttagggtcaagttttgacccaaaatcac 239  Q
    ||||||||||||||||| |||||||||||||||||    
T  25939598 gggtgatttagggtcaatttttgacccaaaatcac 25939564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 27056073 - 27056000
Alignment:
Q  144 ttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggt 218  Q
    |||||||||||  |||||||||||||||  ||| ||||||| | ||||||||||| |||  ||||||||||||||    
T  27056073 ttctctcttttgtgagccgtcaccaaaaccctaattttttctccttcatccaccagaga-agggtgatttagggt 27056000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 27831088 - 27831144
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||| |||||||||| ||||||| |||||||| |||||||||| ||||    
T  27831088 ttcatccaccaaaga-ggggtgatttggggtcaa-ttttgacctaaaatcacccatcta 27831144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 29776827 - 29776782
Alignment:
Q  175 tagttttttcactttcatccaccaaagagggggtgatttagggtcaa 221  Q
    |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  29776827 tagttttttctccttcatccaccaaaga-ggggtgatttagggtcaa 29776782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 53426760 - 53426837
Alignment:
Q  168 aaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||| |||||||| ||  |||||||||| |||||| ||  |||||||||||||| |||| || ||||||||||||||||    
T  53426760 aaaactctagtttcttttctttcatccatcaaagatgga-tgatttagggtcaattttttacgcaaaatcacccctcta 53426837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 33978089 - 33978010
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatc 237  Q
    |||||||||| ||||||||||||| | | | ||||||||| ||| |  || ||||||| |||||| |||||||||||||||    
T  33978089 gagccgtcacaaaaattctagtttctcctccttcatccacaaaaaaatgg-tgatttaaggtcaatttttgacccaaaatc 33978010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 40796995 - 40797065
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||||  ||| ||||||||| ||||| ||||||||||| || |||||| |||||||||||||||||    
T  40796995 ctagtttcttcatcttcctccaccaaaaagggg-tgatttagggttaa-ttttgagccaaaatcacccctcta 40797065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 16913263 - 16913361
Alignment:
Q  147 tctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||  |||||||||||||||  ||||||| ||| | ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  16913263 tctcttttgtgagccgtcaccaaaaccctagtttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttgacccgaaatcacccctcta 16913361  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 7049192 - 7049278
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctc 244  Q
    |||||||||||||||   || ||||||| | ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  7049192 gagccgtcaccaaaaccataattttttctccttcatccaccaaagagggg-tgatttagggtcaacttttgactcaaaatcacccctc 7049278  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 10744539 - 10744612
Alignment:
Q  172 ttctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||| ||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||    
T  10744539 ttctagtttcttcaccttcatccaccaaagatggg-tgatttagggtcaacttttgacccaaaatcactcctcta 10744612  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 20844930 - 20845041
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| ||||||||| |  |||||||||||||||   |||||| ||| | || ||| |||||||||||||| ||| | |||||| ||||||||||    
T  20844930 ctcttttccctttctctcttgt--gagccgtcaccaaaaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgaccca 20845027  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  20845028 aaatcacccctcta 20845041  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 12576642 - 12576559
Alignment:
Q  162 gtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||| ||||| ||||||| ||  | ||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  12576642 gtcacaaaaatcctagtttcttttccttcatccacgaaagagggg-tgatttagggtcaatttttgaccctaaatcacccctcta 12576559  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 4663958 - 4663901
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  4663958 ttcatccaccaaagagggg-tgattgtgggtcaatttttgacccaaaatcacccctcta 4663901  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 19759779 - 19759821
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  19759779 ggggtgatttagggtcaatttttgacccaaaatcacccctcta 19759821  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 32457609 - 32457679
Alignment:
Q  175 tagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||| | |||||| || ||||||||| |||||||| ||||| ||||||||||||||||||| ||||    
T  32457609 tagttttttctccttcatctactaaagagggg-tgatttagcgtcaatttttgacccaaaatcacccatcta 32457679  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 4868171 - 4868129
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattata 71  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  4868171 aattaaagattattaactgtttttagtattaaatactattata 4868129  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 27575193 - 27575113
Alignment:
Q  160 ccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    |||||| |||||||||||||| ||| |||||||||| |||||| ||| |||| |||  |||| |||||||| ||||||||||    
T  27575193 ccgtcatcaaaattctagtttattctctttcatccatcaaaga-gggatgatatagaatcaatttttgacctaaaatcaccc 27575113  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 32804286 - 32804327
Alignment:
Q  205 gggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  32804286 gggtgatttagggtcaatttttgacccaaaatcacccatcta 32804327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 8644166 - 8644272
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||||||| ||||||||| | |  |||||||||||||||  |||||||  |  | |||||||| |||| |  ||||||||||||||||| |||||||| |    
T  8644166 ctctcttctccttctctcctgtgtgagccgtcaccaaaaccctagtttcatttccttcatccatcaaa-aatgggtgatttagggtcaatttttgaccaa 8644264  T
Q  233 aaatcacc 240  Q
    ||||||||    
T  8644265 aaatcacc 8644272  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 13234230 - 13234194
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    |||||||||||||||||| |||||||| |||||||||    
T  13234230 ggggtgatttagggtcaatttttgacctaaaatcacc 13234194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 3390377 - 3390465
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| | |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  3390377 gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 3390465  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 25771390 - 25771478
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| | |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  25771390 gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 25771478  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 10588988 - 10589071
Alignment:
Q  162 gtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||| ||||||| ||||  ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  10588988 gtcaccaaaatcctagtttcttcatcttcatccaccaaaaagggg-tgatttagggtcaatttttgacccaaaatcacccctcta 10589071  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 37883577 - 37883686
Alignment:
Q  134 tctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaa 233  Q
    ||||||||||||||||||| |  |||||||||| |||||  || ||| ||| | ||||||||||||||||||| |||||||||||||| |||| | ||||    
T  37883577 tctcttccccttctctcttgt--gagccgtcactaaaatcataatttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttaatccaa 37883673  T
Q  234 aatcacccctcta 246  Q
    |||||||||||||    
T  37883674 aatcacccctcta 37883686  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 3602908 - 3603018
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| ||||||||| |  |||||||||||||||| ||||||| ||| | |||||||| |||||| ||| ||||||| |||||| ||||||| ||    
T  3602908 ctcttttccctttctctcttgt--gagccgtcaccaaaatcctagtttcttctccttcatccatcaaagatggg-tgatttatggtcaacttttgactca 3603004  T
Q  233 aaatcacccctcta 246  Q
    ||||||||||||||    
T  3603005 aaatcacccctcta 3603018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 19581188 - 19581084
Alignment:
Q  141 cccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    ||||||| || ||| | ||||||||||||||   |||||||||||| ||||||||| ||||| |||||||||| ||||||| |||| || ||||||||||    
T  19581188 cccttctttcgtttggaagccgtcaccaaaaccttagttttttcaccttcatccactaaaga-ggggtgattttgggtcaatttttaacacaaaatcacc 19581090  T
Q  241 cctcta 246  Q
    ||||||    
T  19581089 cctcta 19581084  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 25516439 - 25516527
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||  |||  ||||||| ||| | ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  25516439 gagccgtcacacaaaccctagtttcttctccttcatccaccaaagagggg-tgatttagggtcaatatttgacccaaaatcacccctcta 25516527  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 27024304 - 27024220
Alignment:
Q  161 cgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||| |||||||| ||| | |||||||| |||||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  27024304 cgtcaccaaaactctagtttcttctccttcatccatcaaagatggg-tgatttagggtcattttttgacccaaaatcacccctcta 27024220  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 40125334 - 40125422
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||| |||||   |||||| ||| | ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  40125334 gagccgtcatcaaaaccttagtttcttctccttcatccaccaaagagggg-tgatttagggttaatttttgacccaaaatcacccctcta 40125422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 4878867 - 4878795
Alignment:
Q  154 ttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttg 227  Q
    |||||||||||||||||| |||||||| ||||| |||| ||| |||||| |||||||||||||||||| |||||    
T  4878867 ttggagccgtcaccaaaactctagtttcttcaccttcacccatcaaaga-ggggtgatttagggtcaacttttg 4878795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 41176807 - 41176895
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||  |||  ||||||| ||| | ||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||    
T  41176807 gagccgtcacacaaaccctagtttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttgacccaaaaccacccatcta 41176895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 24500443 - 24500530
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaa 221  Q
    ||||||||||||||||||| || ||||||||||||||||   || ||| ||||| ||||||||| |||||  |||||||||||||||||    
T  24500443 ctctcttccccttctctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaaga-tgggtgatttagggtcaa 24500530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 27191487 - 27191416
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||||    
T  27191487 ctagtttcttctccttcatccaccaaagaggga-tgatttagggtcaatttttgaccctaaatcacccctcta 27191416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 27841301 - 27841230
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||||    
T  27841301 ctagtttcttctccttcatccaccaaagaggga-tgatttagggtcaatttttgaccctaaatcacccctcta 27841230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 44167861 - 44167790
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||||||||||||||||||| |||| || |||||| ||||||||||||||||||||||||    
T  44167861 ctagtttcttctccttcatccaccaaagagggg-tgatatatggtcaatttttgacccaaaatcacccctcta 44167790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 3464904 - 3464986
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacc 240  Q
    ||||||||||  ||| |||| ||| ||| | ||||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  3464904 gagccgtcacacaaactctaatttcttctccttcatccaccaaagagggg-tgatttagggtcaatttttgatccaaaatcacc 3464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 29812794 - 29812696
Alignment:
Q  147 tctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||  |||| | ||| |||||| |||||| || || |||||||| ||||||| || |||||||||||||| ||||||| ||||||||||||||||    
T  29812794 tctcttttgtgagctgccactaaaattttagtttatttaccttcatccatcaaagagagg-tgatttagggtcaatttttgacacaaaatcacccctcta 29812696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 6089869 - 6089926
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  6089869 ttcatccatcaaagagggg-tgatttaaggtcaatttttgacccaaaatcacccctcta 6089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 7640479 - 7640437
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  7640479 ggggtgatttagggtcaatttttgacccaaaatcacccctcta 7640437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 42105890 - 42105833
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  42105890 ttcatccaccaaagagggg-tgctttagggtcaatttttgacccaaaatcaccactcta 42105833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 44441331 - 44441412
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcac 239  Q
    ||||||||||||||| | || ||||||| |||||||||| ||||||  |||||| |||| ||||| |||||||||||||||||    
T  44441331 gagccgtcaccaaaactttaattttttctctttcatccatcaaaga-tgggtgacttagagtcaatttttgacccaaaatcac 44441412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 5930372 - 5930456
Alignment:
Q  161 cgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||| ||| | | ||| | |||||||||||||||| || ||||||||||| || |||||||||||||||| |||||||    
T  5930372 cgtcaccaaaatcctaatatcttctccttcatccaccaaagagagg-tgatttagggttaatttttgacccaaaatcatccctcta 5930456  T

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Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 15674097 - 15674055
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  15674097 ggggtgatttagggtcaatttttgacccaaaatcactcctcta 15674055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 43566840 - 43566904
Alignment:
Q  175 tagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    |||||| ||| | ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  43566840 tagtttcttctccttcatccaccaaagagggg-tgatt-agggtcaatttttgacccaaaatcaccc 43566904  T

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Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 41841900 - 41841980
Alignment:
Q  163 tcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccc-aaaatcacccct 243  Q
    ||||||||| |||||||||||| | |||||||| || ||| ||| ||||||| |||||| ||||||||| ||||||||||||    
T  41841900 tcaccaaaactctagttttttctccttcatccatcataga-gggttgatttatggtcaatttttgacccaaaaatcacccct 41841980  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 9715697 - 9715634
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatca 238  Q
    ||||||||||| |||||||||| |||| | ||| |||||||||||||| |||||| |||||||||    
T  9715697 ctagttttttctctttcatccatcaaaaatggg-tgatttagggtcaatttttgatccaaaatca 9715634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 34479901 - 34479984
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    ||||| ||||||||| |||||||| ||| | |||||||| |||||| ||  |||| ||||||||| |||| ||||||||||||||    
T  34479901 gagccatcaccaaaactctagtttcttctcattcatccatcaaagatgga-tgatatagggtcaattttttacccaaaatcaccc 34479984  T

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Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 234804 - 234869
Alignment:
Q  48 tttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaacatata 117  Q
    |||||||||||||| ||||| ||||||   |||| |||||||||| ||||||||||||||||| ||||||    
T  234804 tttttagtattaaaaactataataaaa---tgta-tttaataattgctatcaatataaatgaagcatata 234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 3398119 - 3398060
Alignment:
Q  188 ttcatccaccaaaga-gggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||| ||||||| |||| |||||| ||||||||| | ||||||||||||    
T  3398119 ttcatccaccaaagaagggggtggtttaaggtcaatttttgaccccagatcacccctcta 3398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 36507893 - 36507963
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctct 245  Q
    ||||||| ||| | |||||||||||||||  || ||| |||||||||| |||||||||||||||||| ||||    
T  36507893 ctagtttcttctccttcatccaccaaagaatgg-tgacttagggtcaatttttgacccaaaatcacctctct 36507963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 26491280 - 26491333
Alignment:
Q  189 tcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccct 243  Q
    |||||||||||||||||| | ||||| | |||| |||||||||||||||||||||    
T  26491280 tcatccaccaaagagggg-taatttaagttcaatttttgacccaaaatcacccct 26491333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 44951457 - 44951510
Alignment:
Q  167 caaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaa 221  Q
    |||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||||    
T  44951457 caaaatcctagtttcttctccttcatccaccaaaga-ggggtgatttagggtcaa 44951510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 16720996 - 16720916
Alignment:
Q  147 tctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttga 228  Q
    ||||| || ||||||||||||||||| |||||||| |  | |||||||| || ||| | |||||||||||||||| ||||||    
T  16720996 tctctcttgggagccgtcaccaaaatcctagttttctttccttcatccatcagaga-gaggtgatttagggtcaatttttga 16720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 16880082 - 16880041
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctct 245  Q
    ||||||||||  |||||| |||||||||||||||||||||||    
T  16880082 ggggtgatttttggtcaatttttgacccaaaatcacccctct 16880041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 22345102 - 22344993
Alignment:
Q  134 tctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaa 233  Q
    ||||||||||||||||||  |  |||||||||||||||  ||||||| ||| | |||||||| |||||||||| ||||||||| |||| |||||||||||    
T  22345102 tctcttccccttctctctagt--gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagagggg-tgatttaggttcaatttttgacccaa 22345006  T
Q  234 aatcacccctcta 246  Q
    |||||||||||||    
T  22345005 aatcacccctcta 22344993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 44514183 - 44514077
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| |||||||||||| | || | ||||||||||||||  ||| ||| ||||| ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  44514183 ctcttttccccttctctttcttggaagccgtcaccaaaaccctaatttcttcaccttcatccactaaagagggg-tgatttagggtcaatttttgaccca 44514085  T
Q  233 aaatcacc 240  Q
    ||||||||    
T  44514084 aaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 52839353 - 52839456
Alignment:
Q  143 cttctctctttttg-gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    |||||||||||||| |||  ||| |||||| |||||||| ||| ||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||    
T  52839353 cttctctctttttgagagttgtcgccaaaactctagtttgttctctttcatccattaaagagggg-tgatttagggtcaatttttgacccaaaatcaccc 52839451  T
Q  242 ctcta 246  Q
     ||||    
T  52839452 ttcta 52839456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 13691897 - 13691839
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  13691897 ttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcacccctcta 13691839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 14717433 - 14717340
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgac 229  Q
    |||| ||||| ||||||||| |  ||||||||||||||| |||||||| ||| | ||||||||||||||| |||||||||||||||||| |||||||    
T  14717433 ctcttttccctttctctcttgt--gagccgtcaccaaaactctagtttcttctccttcatccaccaaaga-ggggtgatttagggtcaatttttgac 14717340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 30853962 - 30853868
Alignment:
Q  147 tctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccc 242  Q
    ||||| ||| ||||| |||||||||  ||||||| ||| | ||||||||||||||| || |||||| | |||||| ||||||||||||||||||||    
T  30853962 tctctcttttgagccatcaccaaaaccctagtttcttctccttcatccaccaaaga-ggtgtgattcaaggtcaatttttgacccaaaatcacccc 30853868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 44562871 - 44562830
Alignment:
Q  205 gggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  44562871 gggtgatttagggtcaatttttgacccaaaatcacccctcta 44562830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 22032228 - 22032170
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgaccc-aaaatcacccctcta 246  Q
    ||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||    
T  22032228 ttcatccaccaaagaggga-tgatttagggtcaatttttgacccaaaaatcacccctcta 22032170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 52398586 - 52398651
Alignment:
Q  48 tttttagtattaaatactattataaaactatgtaatttaataattactatcaatataaatgaaacatata 117  Q
    |||||||||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| ||||||    
T  52398586 tttttagtattaaaaactataataaaa---tgta-tttaataattactatcaatataaatgaagcatata 52398651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 5832224 - 5832266
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  5832224 ggggtgatttagggtcaatttttgaccctaaatcacccctcta 5832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 23893796 - 23893838
Alignment:
Q  29 aattaaggattattaattgtttttagtattaaatactattata 71  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  23893796 aattaaagattattatttgtttttagtattaaatactattata 23893838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 27469901 - 27469821
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatca 238  Q
    |||||||||||||||||||||||| |||   ||||||||  ||||| ||||||||||| |||||| ||| || |||||||||    
T  27469901 gagccgtcaccaaaattctagtttcttcttcttcatccattaaaga-ggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 6213038 - 6212967
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    ||||||| ||| | ||| |||| |||||||||| ||||||| |||||| ||||||||||||||||| ||||||    
T  6213038 ctagtttcttctccttcgtccatcaaagagggg-tgatttatggtcaatttttgacccaaaatcacacctcta 6212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 33703661 - 33703594
Alignment:
Q  174 ctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccc 242  Q
    ||||||||||| | ||||||||| ||||||||  ||||||| |||||| |||| |||||||||||||||    
T  33703661 ctagttttttctccttcatccactaaagaggga-tgatttatggtcaattttttacccaaaatcacccc 33703594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 38646529 - 38646612
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcaccc 241  Q
    ||||| || |||||| |||| ||||||| | |||||| | |||||||| | ||||||| |||||| |||||||||||||||||||    
T  38646529 gagccatcgccaaaactctaattttttctccttcatctatcaaagaggag-tgatttatggtcaatttttgacccaaaatcaccc 38646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 630908 - 630866
Alignment:
Q  204 ggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||    
T  630908 ggggtgatttagggtcaatttttgaccctaaatcacccatcta 630866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 52839497 - 52839554
Alignment:
Q  188 ttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||| |||||||||| ||||||| | |||| ||||||||||||||||||| ||||    
T  52839497 ttcatccatcaaagagggg-tgatttatgatcaatttttgacccaaaatcacccttcta 52839554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 9817 - 9729
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||| ||||  ||||||| ||| | ||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||    
T  9817 gagccgtcacaaaaaccctagtttcttctccttcatccaccaaagaggga-tgatttagggtcaatttttgacccaaaatcactcctcta 9729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 1282 - 1174
Alignment:
Q  133 ctctcttccccttctctctttttggagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgaccca 232  Q
    |||| ||||| ||||||||| |  ||||||||||| ||| |||||||  ||| |||||||||||||||||  |||||||||| |||||| ||||||||||    
T  1282 ctcttttccctttctctcttgt--gagccgtcacctaaactctagttacttctctttcatccaccaaaga-tgggtgattta-ggtcaatttttgaccca 1187  T
Q  233 aaatcacccctct 245  Q
    |||||| ||||||    
T  1186 aaatcatccctct 1174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 10964 - 11052
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatcacccctcta 246  Q
    |||||||||||||||  ||||||| ||| || |||| ||||||||| ||| |||||| ||||||| |||||||  |||||||||||||||    
T  10964 gagccgtcaccaaaaccctagtttcttctctatcatacaccaaagatggg-tgattttgggtcaatttttgacttaaaatcacccctcta 11052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 725 - 805
Alignment:
Q  157 gagccgtcaccaaaattctagttttttcactttcatccaccaaagagggggtgatttagggtcaagttttgacccaaaatca 238  Q
    ||||||||| ||||| |||||||| ||| | ||||||||||||| | |  |||||||| |||||| |||||||| |||||||    
T  725 gagccgtcatcaaaactctagtttcttctccttcatccaccaaa-aagatgtgatttaaggtcaatttttgaccaaaaatca 805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 137226 - 137179
Alignment:
Q  158 agccgtcaccaaaattctagttttttcactttcatccaccaaagagggg 206  Q
    ||||||||||||||  ||||||| ||||||||||| |||||||||||||    
T  137226 agccgtcaccaaaac-ctagtttcttcactttcattcaccaaagagggg 137179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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